Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_K04
         (989 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   4.1  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   4.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   4.1  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    26   7.1  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 11/29 (37%), Positives = 11/29 (37%)
 Frame = +1

Query: 829  PPXPPTTXSXPXXAXTPPNPPXPXKXTPP 915
            P  PP   S P     PP P  P    PP
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 15/47 (31%), Positives = 17/47 (36%)
 Frame = +1

Query: 775 PKSXXFPPXXRPXXXXXXPPXPPTTXSXPXXAXTPPNPPXPXKXTPP 915
           P+S   PP   P      PP P +    P  A     PP P    PP
Sbjct: 133 PQSELRPPTSAPPRPSIPPPSPASAPPIPSKA-----PPIPSSLPPP 174


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 14/45 (31%), Positives = 18/45 (40%)
 Frame = +1

Query: 781  SXXFPPXXRPXXXXXXPPXPPTTXSXPXXAXTPPNPPXPXKXTPP 915
            S   PP  +P      PP PP + + P    +   PP P   T P
Sbjct: 1175 SSGIPPVPKP--AAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAP 1217



 Score = 27.1 bits (57), Expect = 4.1
 Identities = 14/51 (27%), Positives = 16/51 (31%)
 Frame = +1

Query: 775  PKSXXFPPXXRPXXXXXXPPXPPTTXSXPXXAXTPPNPPXPXKXTPPHXXP 927
            P     PP  +P       P P T    P  +   P  P P    PP   P
Sbjct: 1192 PPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAP 1242


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 12/33 (36%), Positives = 12/33 (36%)
 Frame = +1

Query: 829 PPXPPTTXSXPXXAXTPPNPPXPXKXTPPHXXP 927
           PP P      P  A  P  PP P    PP   P
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766



 Score = 25.8 bits (54), Expect = 9.4
 Identities = 11/34 (32%), Positives = 11/34 (32%)
 Frame = +1

Query: 796 PXXRPXXXXXXPPXPPTTXSXPXXAXTPPNPPXP 897
           P   P      PP PP           PP PP P
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +1

Query: 832 PXPPTTXSXPXXAXTPPNPPXPXKXTPP 915
           P  PTT S    A  PP P  P + TPP
Sbjct: 343 PAAPTTVSSERNA--PPYPSAPTRPTPP 368


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,158,578
Number of Sequences: 5004
Number of extensions: 7971
Number of successful extensions: 60
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 511279616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)