Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_K03
         (913 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC034502-1|AAH34502.1|  594|Homo sapiens choline dehydrogenase p...    77   1e-13
AJ272267-1|CAB75961.1|  482|Homo sapiens choline dehydrogenase p...    54   5e-07
BC014483-1|AAH14483.1|  468|Homo sapiens coenzyme Q6 homolog, mo...    33   1.4  
BC014181-1|AAH14181.1|  468|Homo sapiens coenzyme Q6 homolog, mo...    33   1.4  
AK222965-1|BAD96685.1|  468|Homo sapiens CGI-10 protein isoform ...    33   1.4  
X53778-1|CAA37794.1|  331|Homo sapiens uracil DNA glycosylase pr...    32   3.3  
AF132944-1|AAD27719.1|  468|Homo sapiens CGI-10 protein protein.       31   5.8  

>BC034502-1|AAH34502.1|  594|Homo sapiens choline dehydrogenase
           protein.
          Length = 594

 Score = 76.6 bits (180), Expect = 1e-13
 Identities = 47/137 (34%), Positives = 66/137 (48%), Gaps = 6/137 (4%)
 Frame = +2

Query: 320 QNGSRYDFIIVGAGTAGSALAARLSEVANFSVLLLEAG------GDPPIEAIIPAFRETL 481
           ++   Y +++VGAG+AG  LA RL+E     VLLLEAG      G   +   I      L
Sbjct: 36  ESRDEYSYVVVGAGSAGCVLAGRLTEDPAERVLLLEAGPKDVRAGSKRLSWKIH-MPAAL 94

Query: 482 KASSVDWNFTSVENNITSQALKRGIEQQPRGKMLGGSGSLNHMVYARGFPSDYHEWASIA 661
            A+  D  +    +    + L   +   PRG++ GGS SLN MVY RG   DY  W    
Sbjct: 95  VANLCDDRYNWCYHTEVQRGLDGRVLYWPRGRVWGGSSSLNAMVYVRGHAEDYERWQRQG 154

Query: 662 GETWNWTNVLKYFMKTE 712
              W++ + L YF K +
Sbjct: 155 ARGWDYAHCLPYFRKAQ 171


>AJ272267-1|CAB75961.1|  482|Homo sapiens choline dehydrogenase
           protein.
          Length = 482

 Score = 54.4 bits (125), Expect = 5e-07
 Identities = 22/49 (44%), Positives = 28/49 (57%)
 Frame = +2

Query: 566 PRGKMLGGSGSLNHMVYARGFPSDYHEWASIAGETWNWTNVLKYFMKTE 712
           PRG++ GGS SLN MVY RG   DY  W       W++ + L YF K +
Sbjct: 11  PRGRVWGGSSSLNAMVYVRGHAEDYERWQRQGARGWDYAHCLPYFRKAQ 59


>BC014483-1|AAH14483.1|  468|Homo sapiens coenzyme Q6 homolog,
           monooxygenase (S. cerevisiae) protein.
          Length = 468

 Score = 33.1 bits (72), Expect = 1.4
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
 Frame = +2

Query: 296 TWPKDSVLQNGSRYDFIIVGAGTAGSALAARLSEVANF---SVLLLEAGGDPPIEAIIPA 466
           +W + S     + YD ++ G G  G+A+A  L    +F    +LLLEAG    +E +   
Sbjct: 23  SWRRWSGASTDTVYDVVVSGGGLVGAAMACALGYDIHFHDKKILLLEAGPKKVLEKLSET 82

Query: 467 FRETLKASS 493
           +   + + S
Sbjct: 83  YSNRVSSIS 91


>BC014181-1|AAH14181.1|  468|Homo sapiens coenzyme Q6 homolog,
           monooxygenase (S. cerevisiae) protein.
          Length = 468

 Score = 33.1 bits (72), Expect = 1.4
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
 Frame = +2

Query: 296 TWPKDSVLQNGSRYDFIIVGAGTAGSALAARLSEVANF---SVLLLEAGGDPPIEAIIPA 466
           +W + S     + YD ++ G G  G+A+A  L    +F    +LLLEAG    +E +   
Sbjct: 23  SWRRWSGASTDTVYDVVVSGGGLVGAAMACALGYDIHFHDKKILLLEAGPKKVLEKLSET 82

Query: 467 FRETLKASS 493
           +   + + S
Sbjct: 83  YSNRVSSIS 91


>AK222965-1|BAD96685.1|  468|Homo sapiens CGI-10 protein isoform a
           variant protein.
          Length = 468

 Score = 33.1 bits (72), Expect = 1.4
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
 Frame = +2

Query: 296 TWPKDSVLQNGSRYDFIIVGAGTAGSALAARLSEVANF---SVLLLEAGGDPPIEAIIPA 466
           +W + S     + YD ++ G G  G+A+A  L    +F    +LLLEAG    +E +   
Sbjct: 23  SWRRWSGASTDTVYDVVVSGGGLVGAAMACALGYDIHFHDKKILLLEAGPKKVLEKLSET 82

Query: 467 FRETLKASS 493
           +   + + S
Sbjct: 83  YSNRVSSIS 91


>X53778-1|CAA37794.1|  331|Homo sapiens uracil DNA glycosylase
           protein.
          Length = 331

 Score = 31.9 bits (69), Expect = 3.3
 Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 5/108 (4%)
 Frame = +2

Query: 356 AGTAGSALAARLSEVANFSVLLLEAGGD--PPIEAIIP--AFR-ETLKASSVDWNFTSVE 520
           +G  G  +AA LS  ++  +L L+A G   P +   +   AFR  T   S VD     +E
Sbjct: 192 SGNCG-VMAAGLSRTSSLPLLALKAVGKVIPELNGKLTGMAFRVPTANVSVVDLT-CRLE 249

Query: 521 NNITSQALKRGIEQQPRGKMLGGSGSLNHMVYARGFPSDYHEWASIAG 664
                  +K+ ++Q   G + G  G   H V +  F SD H     AG
Sbjct: 250 KPAKYDDIKKVVKQASEGPLKGILGYTEHQVVSSDFNSDTHSSTFDAG 297


>AF132944-1|AAD27719.1|  468|Homo sapiens CGI-10 protein protein.
          Length = 468

 Score = 31.1 bits (67), Expect = 5.8
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = +2

Query: 335 YDFIIVGAGTAGSALAARLSEVANF---SVLLLEAGGDPPIEAIIPAFRETLKASS 493
           YD ++ G G  G+A+A  L    +F    +LLLEAG    +E +   +   + + S
Sbjct: 36  YDVVVSGGGLVGAAMACALGYDIHFHDKKILLLEAGPKKVLEKLSETYSNRVSSIS 91


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,520,025
Number of Sequences: 237096
Number of extensions: 3058815
Number of successful extensions: 8174
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8166
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11825849886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)