Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_K02
         (802 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   0.021
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    33   0.036
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.25 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   1.8  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   3.1  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    27   4.1  
SPCC1223.08c |dfr1||dihydrofolate reductase Dfr1|Schizosaccharom...    27   4.1  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   4.1  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   4.1  

>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +2

Query: 683 PPPPPPPPXXXGGXG 727
           PPPPPPPP      G
Sbjct: 945 PPPPPPPPPLVSAAG 959



 Score = 27.5 bits (58), Expect(2) = 0.021
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +2

Query: 683 PPPPPPPPXXXGGXG 727
           PPPPPPPP      G
Sbjct: 946 PPPPPPPPLVSAAGG 960



 Score = 25.4 bits (53), Expect(2) = 0.021
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +2

Query: 674 FXXPPPPPPP 703
           F  PPPPPPP
Sbjct: 944 FPPPPPPPPP 953


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 33.5 bits (73), Expect = 0.036
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = +2

Query: 686 PPPPPPPXXXGGXGXXXXXXXKXXPPPPP 772
           PPPPPPP              +  PPPPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPP 365



 Score = 32.7 bits (71), Expect = 0.062
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = +2

Query: 683 PPPPPPPPXXXGGXGXXXXXXXKXXPPPPP 772
           PPPPPPP     G            PPPPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366



 Score = 29.5 bits (63), Expect = 0.58
 Identities = 14/33 (42%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
 Frame = +2

Query: 683 PPPPPPPPXXXGG---XGXXXXXXXKXXPPPPP 772
           PPPPPPP     G    G          PPPPP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343



 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/28 (35%), Positives = 11/28 (39%)
 Frame = +2

Query: 689 PPPPPPXXXGGXGXXXXXXXKXXPPPPP 772
           PP PPP              +  PPPPP
Sbjct: 290 PPLPPPSSRVSAAALAANKKRPPPPPPP 317


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = +2

Query: 683 PPPPPPPPXXXGGXGXXXXXXXKXXPPPPP 772
           PPPPPPPP   G             PPPPP
Sbjct: 761 PPPPPPPPGVAGA-------GPPPPPPPPP 783



 Score = 29.5 bits (63), Expect = 0.58
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = +2

Query: 683 PPPPPPPPXXXGGXGXXXXXXXKXXPPP 766
           PPPPPPPP    G         +  P P
Sbjct: 776 PPPPPPPPAVSAGGSRYYAPAPQAEPEP 803



 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/29 (37%), Positives = 11/29 (37%)
 Frame = +2

Query: 683 PPPPPPPPXXXGGXGXXXXXXXKXXPPPP 769
           PPPPPPPP      G           P P
Sbjct: 775 PPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = +2

Query: 683 PPPPPPPPXXXGGXGXXXXXXXKXXPPPPP 772
           PPPPPPPP              +  PPPPP
Sbjct: 9   PPPPPPPP--------GFEPPSQPPPPPPP 30



 Score = 21.8 bits (44), Expect(2) = 10.0
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 674 FXXPPPPPPPP 706
           F  P  PPPPP
Sbjct: 18  FEPPSQPPPPP 28



 Score = 21.4 bits (43), Expect(2) = 10.0
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +2

Query: 683 PPPPPPPPXXXG 718
           PP  PPPP   G
Sbjct: 20  PPSQPPPPPPPG 31


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 674 FXXPPPPPPPP 706
           +  PPPPPPPP
Sbjct: 187 YNPPPPPPPPP 197


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 683 PPPPPPPP 706
           PPPPPPPP
Sbjct: 306 PPPPPPPP 313



 Score = 26.6 bits (56), Expect = 4.1
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 683 PPPPPPPP 706
           PPPPPPPP
Sbjct: 307 PPPPPPPP 314


>SPCC1223.08c |dfr1||dihydrofolate reductase
           Dfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -2

Query: 144 SEXQTTFKFFVGRKIXVAAILFHLMGE*FLFVKILKEFP 28
           S+ Q    F +G      + L+H + +  LF +I KE+P
Sbjct: 354 SDIQVGKVFIIGGSFLYGSALYHPLTKNLLFTRIHKEYP 392


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 683  PPPPPPPP 706
            PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 683 PPPPPPPP 706
           PPPPPPPP
Sbjct: 370 PPPPPPPP 377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,856,128
Number of Sequences: 5004
Number of extensions: 25000
Number of successful extensions: 226
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)