Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_J22
(904 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch... 46 1e-05
SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi... 34 0.032
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos... 31 0.17
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 31 0.22
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce... 30 0.52
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 1.2
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa... 28 1.6
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch... 27 2.8
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 2.8
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces... 27 3.6
SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr... 26 6.4
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 26 6.4
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ... 26 6.4
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 26 6.4
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 26 8.4
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy... 26 8.4
>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 150
Score = 45.6 bits (103), Expect = 1e-05
Identities = 42/146 (28%), Positives = 66/146 (45%), Gaps = 2/146 (1%)
Frame = +3
Query: 123 KMRTVHNILDVDKDGLISYNDFLLFAERFKSLGHLDAKQAKEFTDIIKMTWEQQWGTIDP 302
+ R ++ D D+DG I+ N+ + +SLG + A E D+I GTID
Sbjct: 13 EFREAFSLFDRDQDGNITSNELGVV---MRSLGQ--SPTAAELQDMINEVDADGNGTIDF 67
Query: 303 YNFVTVEQYLEDMHHVLNDKTLKKKAHRWLPYLFKAVDADRSGYISVREFKLFFECLG-- 476
F+T+ M N++ +++ FK D D +GYI+V E LG
Sbjct: 68 TEFLTM--MARKMKDTDNEEEVREA--------FKVFDKDGNGYITVEELTHVLTSLGER 117
Query: 477 LTSEHAAVAFAGIDVNGDGKVSLKEF 554
L+ E A D +GDG ++ +EF
Sbjct: 118 LSQEEVADMIREADTDGDGVINYEEF 143
>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 33.9 bits (74), Expect = 0.032
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +3
Query: 396 YLFKAVDADRSGYISVREF--KLFFECLGLTSEHAAVAFAGIDVNGDGKVSLKEFVQL 563
Y+F DAD++GYI +EF L G ++ AF D++ +G +S E +++
Sbjct: 67 YVFNVFDADKNGYIDFKEFICALSVTSRGELNDKLIWAFQLYDLDNNGLISYDEMLRI 124
Score = 25.8 bits (54), Expect = 8.4
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 135 VHNILDVDKDGLISYNDFLLFAERFKSLGHLDAK 236
V N+ D DK+G I + +F+ A S G L+ K
Sbjct: 68 VFNVFDADKNGYIDFKEFIC-ALSVTSRGELNDK 100
>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
Plc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 899
Score = 31.5 bits (68), Expect = 0.17
Identities = 27/91 (29%), Positives = 40/91 (43%)
Frame = +3
Query: 330 LEDMHHVLNDKTLKKKAHRWLPYLFKAVDADRSGYISVREFKLFFECLGLTSEHAAVAFA 509
L D+H + L +L F+ DAD SG +S EF+ F L SE V
Sbjct: 316 LGDVHRMCQMLHLNASME-FLEETFQKADADHSGKLSFEEFQHFVSLLKTRSE--IVDIF 372
Query: 510 GIDVNGDGKVSLKEFVQLGKEFFHTEDETRV 602
+G K+SL++F + F T + R+
Sbjct: 373 KEYTSGSDKMSLEQF----RHFLSTSQKARL 399
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 31.1 bits (67), Expect = 0.22
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +3
Query: 399 LFKAVDADRSGYISVREFKLFFECLGLTSEHAAVAFAGIDVNGDGKVSLKEF 554
LF VD GY+S E FF L + A + D N +GK+++ EF
Sbjct: 266 LFSNVDKAHKGYVSGSEAYSFFLASKLPEDVLAQIWDLSDTNSNGKLNIGEF 317
>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 174
Score = 29.9 bits (64), Expect = 0.52
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Frame = +3
Query: 390 LPYLFKAVDADRSGYISVREFKLFFECLGLTS-------EHAAVAFAGIDVNGDGKVSLK 548
L + FK D DR GYIS E L + + T+ + +D + DGK+S +
Sbjct: 95 LKFAFKIYDIDRDGYISNGELYLVLKMMVGTNLREDQLQQIVDKTIMEVDKDRDGKISFE 154
Query: 549 EF 554
EF
Sbjct: 155 EF 156
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 28.7 bits (61), Expect = 1.2
Identities = 24/75 (32%), Positives = 40/75 (53%)
Frame = -1
Query: 634 TSVSGPQNILETLVSSSVWKNSLPSWTNSFKDTLPSPLTSMPAKATAACSLVSPRHSKNN 455
+S S + TL SSS+ +S+PS T+S + S L+S + +TA+ S S S +
Sbjct: 218 SSSSPSSSSSSTLTSSSLSTSSIPS-TSSSSSSTSSSLSSSSSSSTASSS--SSSSSIIS 274
Query: 454 LNSRTDMYPERSAST 410
+S + P ++ST
Sbjct: 275 SSSSSSSSPTSTSST 289
>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1076
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 128 HLAAPELRPGPAPYSSVSESGIKIPN 51
HL AP ++P P S S SG+ PN
Sbjct: 1011 HLVAPRVKPLLPPRSGSSSSGVPAPN 1036
>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 794
Score = 27.5 bits (58), Expect = 2.8
Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 2/90 (2%)
Frame = +3
Query: 93 GWTWSEFWRRKMRTVHNILDVDKDGLISYNDFLLFAERFKSLGHL--DAKQAKEFTDIIK 266
GW+ E R N+L I++ND + +R + GHL D+ ++ ++
Sbjct: 340 GWSAHEETNRISPKDANVLPSIVSIPITFNDGIELLKRLQGHGHLVKDSNWCQDLAPVLS 399
Query: 267 MTWEQQWGTIDPYNFVTVEQYLEDMHHVLN 356
W P V V Q +ED ++N
Sbjct: 400 EVWTGS-KISSPGLEVNVLQDIEDKQKIIN 428
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.5 bits (58), Expect = 2.8
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = -1
Query: 565 PSWTNSFKDTLPSPLT----SMPAKATAACSLVSPRHSKNNLNSRTDMYP 428
P++T D LP+P ++P ++T L P + NNL S+ ++ P
Sbjct: 225 PTYTPKQADPLPAPPPPPPPTLPPQSTNTSQLPMPSRNVNNLGSQVNIPP 274
>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 681
Score = 27.1 bits (57), Expect = 3.6
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +1
Query: 598 ESPRCSGDHSPTFKTHT*DSINDLKYYFTALTXRVPL-TPSRGKQSEFIIKFNALPD 765
ESP + S F T +++D ++YF A TP +++F F+A PD
Sbjct: 92 ESPASPAEASSPFTVRT-PTVHDPEHYFVAQKLSSVFGTPDLEDETDFFDYFSAAPD 147
>SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 431
Score = 26.2 bits (55), Expect = 6.4
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Frame = +3
Query: 27 GXP*DFXPIRNLDSXL*HRAVRGW------TWSEFWRRKMRTVHNILD 152
G P D P R LD L + V+ T S+FWR+ ++ V + D
Sbjct: 64 GGPADSWPQRKLDDFLQNHGVKSLDVPPIETPSQFWRKPLQYVSKVTD 111
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 26.2 bits (55), Expect = 6.4
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -3
Query: 137 DGTHLAAPELRPGPAPYSSVSESG 66
DG H+AAP GP S+ E G
Sbjct: 235 DGKHIAAPNAMNGPVSCVSIIERG 258
>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1213
Score = 26.2 bits (55), Expect = 6.4
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = -1
Query: 217 RDLNLSANSKKSLYEISPSLSTSKMLWTVRILRRQNSDQVQPLTARCQSXESRFRI 50
+DL+ + KSLYE S T + + VR+ ++S + + C+ FR+
Sbjct: 162 KDLSQMRDEAKSLYEARKSYFTVALQYVVRVTSFRSSIDFIVIESICKFSIETFRL 217
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.2 bits (55), Expect = 6.4
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = -1
Query: 592 SSSVWKNSLPSWTNSFKDTLPSPLTSMPAKATAACSLVSPRHSKNNLNSRTDMYPERS 419
+S+V +N L + TN K+T P+ T A+A + ++ +NN R M + S
Sbjct: 1676 TSAVSRN-LENATNDLKETFPTTTTISTARAKPGNNDINTILRRNNSRGRRRMLQQMS 1732
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 25.8 bits (54), Expect = 8.4
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -1
Query: 634 TSVSGPQNILETLVSSSVWKNSLPSW 557
T G ++L ++S ++W SLP W
Sbjct: 637 TITLGKNDLLNAILSQNLWFRSLPFW 662
>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 596
Score = 25.8 bits (54), Expect = 8.4
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = -1
Query: 262 MMSVNSFACFASRWPRDLNLS-ANSK-KSLYEISPSLSTSKM 143
+ SV + A WP+ LNLS AN++ SL ++ P +K+
Sbjct: 226 LQSVTAVTTLAQTWPKLLNLSLANNRITSLSDLDPWSPKTKL 267
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,190,243
Number of Sequences: 5004
Number of extensions: 63108
Number of successful extensions: 200
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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