Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_J21
         (944 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   5.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   7.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   9.3  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 15/65 (23%), Positives = 26/65 (40%)
 Frame = +1

Query: 241 VMRSLGQNPTEAELQDMINEVNADGNGTIDFSRVLDNDGAQDEGHG*RGXNPARPSRVFD 420
           V+ +  +N   + +       NA  N   + +   +N+GA D G+G    N      +F 
Sbjct: 215 VLETCQRNSNNSTITAGNANTNASNNNNNNNNNNNNNNGANDNGNGNGASNNNNNGDMFC 274

Query: 421 KDGNG 435
             G G
Sbjct: 275 HTGLG 279


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +1

Query: 310 DGNGTIDFSRVLDNDGAQDEGHG*RGXNPARPSRVFDKDGNGFIS 444
           DG G  D     D+D   +E    RG + A      D+D +G +S
Sbjct: 273 DGEGADD----RDDDEENEEEEDGRGQSEAEKRLKLDEDADGAVS 313


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 392  FXPRYPCPSSCAP 354
            F P Y  P++CAP
Sbjct: 1803 FSPEYDDPANCAP 1815


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,735
Number of Sequences: 438
Number of extensions: 3331
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30960384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)