Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_J20
(874 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 36 0.008
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 34 0.030
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 32 0.12
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 32 0.12
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 29 1.1
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 29 1.1
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 1.5
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.5
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 23 5.3
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 26 6.1
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 35.9 bits (79), Expect = 0.008
Identities = 15/37 (40%), Positives = 15/37 (40%)
Frame = +1
Query: 451 PPXKXXPPPPPXXXXXFXXXPPPPPXXXXFXXPPPPP 561
P P PPP PPPPP PPPPP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 35.5 bits (78), Expect = 0.010
Identities = 17/41 (41%), Positives = 17/41 (41%)
Frame = +1
Query: 436 PXXXPPPXKXXPPPPPXXXXXFXXXPPPPPXXXXFXXPPPP 558
P P P PPPPP PPPPP PPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPP-------PPPP 783
Score = 34.3 bits (75), Expect = 0.023
Identities = 15/38 (39%), Positives = 15/38 (39%)
Frame = +1
Query: 448 PPPXKXXPPPPPXXXXXFXXXPPPPPXXXXFXXPPPPP 561
P P P PP PPPPP PPPPP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 33.1 bits (72), Expect = 0.053
Identities = 18/62 (29%), Positives = 18/62 (29%)
Frame = +2
Query: 437 PXXXPPXXKXXPPXPXXXXXXFXXPPPPPLXXXFXXPPPPPPXXXXGGXXXXXXXXXXXP 616
P P PP P PPP PPPPPP GG P
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEP 801
Query: 617 PP 622
P
Sbjct: 802 EP 803
Score = 30.3 bits (65), Expect = 0.37
Identities = 19/58 (32%), Positives = 19/58 (32%), Gaps = 3/58 (5%)
Frame = +2
Query: 461 KXXPPXPXXXXXXFXXPPP---PPLXXXFXXPPPPPPXXXXGGXXXXXXXXXXXPPPP 625
K PP P P P PP PPPPPP G PPPP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAG----AGPPPPPPPPP 783
Score = 30.3 bits (65), Expect = 0.37
Identities = 14/42 (33%), Positives = 14/42 (33%)
Frame = +1
Query: 436 PXXXPPPXKXXPPPPPXXXXXFXXXPPPPPXXXXFXXPPPPP 561
P P P P P PPPPP PPPP
Sbjct: 737 PAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778
Score = 29.5 bits (63), Expect = 0.65
Identities = 18/63 (28%), Positives = 19/63 (30%)
Frame = +3
Query: 369 LIXFPXPXKXGKXXPPXXGGGXPPKXXPPXKXXXPPXPXXXXXXSXXPPPPPFXXXFXXP 548
L+ P P P P P PP P PPPPP P
Sbjct: 728 LLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP-------P 780
Query: 549 PPP 557
PPP
Sbjct: 781 PPP 783
Score = 29.5 bits (63), Expect = 0.65
Identities = 17/59 (28%), Positives = 17/59 (28%)
Frame = +3
Query: 402 KXXPPXXGGGXPPKXXPPXKXXXPPXPXXXXXXSXXPPPPPFXXXFXXPPPPPXXXXXG 578
K PP P P PP P PPP PPPPP G
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAG 788
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 33.9 bits (74), Expect = 0.030
Identities = 25/87 (28%), Positives = 28/87 (32%), Gaps = 4/87 (4%)
Frame = +3
Query: 378 FPXPXKXGKXXPPXXGGGXPPKXXPPXKXXXPPXPXXXXXXSXXPPPPPFXXXFXXPPPP 557
FP + G+ PP PP P + PP P PPPP PPP
Sbjct: 197 FPAHHEPGEHMPP------PPMHHKPGEHMPPP-PMHHEPGEHMPPPPMHHEPGEHMPPP 249
Query: 558 PXXXXXGXXXXP----XXXXXXXPPPP 626
P G P PPPP
Sbjct: 250 PMHHEPGEHMPPPPMHHEPGEHMPPPP 276
Score = 32.7 bits (71), Expect = 0.070
Identities = 18/53 (33%), Positives = 18/53 (33%), Gaps = 4/53 (7%)
Frame = +1
Query: 448 PPPXKXXP----PPPPXXXXXFXXXPPPPPXXXXFXXPPPPPXXXXXGXXXXP 594
PPP P PPPP PPPP PPPP G P
Sbjct: 209 PPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPP 261
Score = 32.7 bits (71), Expect = 0.070
Identities = 25/92 (27%), Positives = 27/92 (29%), Gaps = 10/92 (10%)
Frame = +3
Query: 381 PXPXKXGKXXPPXXGGGXPPKXXPPXKXXX------PPXPXXXXXXSXXPPPPPFXXXFX 542
P K G+ PP P + PP PP P PPPP
Sbjct: 211 PMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGE 270
Query: 543 XPPPPPXXXXXGXXXXP----XXXXXXXPPPP 626
PPPP G P PPPP
Sbjct: 271 HMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 302
Score = 32.7 bits (71), Expect = 0.070
Identities = 18/53 (33%), Positives = 18/53 (33%), Gaps = 4/53 (7%)
Frame = +1
Query: 448 PPPXKXXP----PPPPXXXXXFXXXPPPPPXXXXFXXPPPPPXXXXXGXXXXP 594
PPP P PPPP PPPP PPPP G P
Sbjct: 222 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPP 274
Score = 32.7 bits (71), Expect = 0.070
Identities = 18/53 (33%), Positives = 18/53 (33%), Gaps = 4/53 (7%)
Frame = +1
Query: 448 PPPXKXXP----PPPPXXXXXFXXXPPPPPXXXXFXXPPPPPXXXXXGXXXXP 594
PPP P PPPP PPPP PPPP G P
Sbjct: 235 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPP 287
Score = 32.7 bits (71), Expect = 0.070
Identities = 18/53 (33%), Positives = 18/53 (33%), Gaps = 4/53 (7%)
Frame = +1
Query: 448 PPPXKXXP----PPPPXXXXXFXXXPPPPPXXXXFXXPPPPPXXXXXGXXXXP 594
PPP P PPPP PPPP PPPP G P
Sbjct: 248 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPP 300
Score = 32.7 bits (71), Expect = 0.070
Identities = 18/53 (33%), Positives = 18/53 (33%), Gaps = 4/53 (7%)
Frame = +1
Query: 448 PPPXKXXP----PPPPXXXXXFXXXPPPPPXXXXFXXPPPPPXXXXXGXXXXP 594
PPP P PPPP PPPP PPPP G P
Sbjct: 261 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPP 313
Score = 32.7 bits (71), Expect = 0.070
Identities = 18/53 (33%), Positives = 18/53 (33%), Gaps = 4/53 (7%)
Frame = +1
Query: 448 PPPXKXXP----PPPPXXXXXFXXXPPPPPXXXXFXXPPPPPXXXXXGXXXXP 594
PPP P PPPP PPPP PPPP G P
Sbjct: 274 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPP 326
Score = 32.7 bits (71), Expect = 0.070
Identities = 18/53 (33%), Positives = 18/53 (33%), Gaps = 4/53 (7%)
Frame = +1
Query: 448 PPPXKXXP----PPPPXXXXXFXXXPPPPPXXXXFXXPPPPPXXXXXGXXXXP 594
PPP P PPPP PPPP PPPP G P
Sbjct: 287 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPP 339
Score = 31.5 bits (68), Expect = 0.16
Identities = 24/86 (27%), Positives = 27/86 (31%), Gaps = 4/86 (4%)
Frame = +3
Query: 381 PXPXKXGKXXPPXXGGGXPPKXXPPXKXXXPPXPXXXXXXSXXPPPPPFXXXFXXPPPPP 560
P + G+ PP PP P + PP P PPPP PPPP
Sbjct: 250 PMHHEPGEHMPP------PPMHHEPGEHMPPP-PMHHEPGEHMPPPPMHHEPGEHMPPPP 302
Query: 561 XXXXXGXXXXP----XXXXXXXPPPP 626
G P PPPP
Sbjct: 303 MHHEPGEHMPPPPMHHEPGEHMPPPP 328
Score = 31.1 bits (67), Expect = 0.21
Identities = 16/42 (38%), Positives = 16/42 (38%), Gaps = 4/42 (9%)
Frame = +1
Query: 448 PPPXKXXP----PPPPXXXXXFXXXPPPPPXXXXFXXPPPPP 561
PPP P PPPP PPPP PPPP
Sbjct: 300 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 341
Score = 29.9 bits (64), Expect = 0.49
Identities = 14/41 (34%), Positives = 14/41 (34%)
Frame = +1
Query: 472 PPPPXXXXXFXXXPPPPPXXXXFXXPPPPPXXXXXGXXXXP 594
PPPP PPPP PPPP G P
Sbjct: 208 PPPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPP 248
Score = 29.9 bits (64), Expect = 0.49
Identities = 20/71 (28%), Positives = 23/71 (32%)
Frame = +3
Query: 381 PXPXKXGKXXPPXXGGGXPPKXXPPXKXXXPPXPXXXXXXSXXPPPPPFXXXFXXPPPPP 560
P + G+ PP PP P + PP P PPPP PPPP
Sbjct: 276 PMHHEPGEHMPP------PPMHHEPGEHMPPP-PMHHEPGEHMPPPPMHHEPGEHMPPPP 328
Query: 561 XXXXXGXXXXP 593
G P
Sbjct: 329 MHHEPGEHMPP 339
Score = 28.3 bits (60), Expect = 1.5
Identities = 18/60 (30%), Positives = 21/60 (35%)
Frame = +3
Query: 381 PXPXKXGKXXPPXXGGGXPPKXXPPXKXXXPPXPXXXXXXSXXPPPPPFXXXFXXPPPPP 560
P + G+ PP PP P + PP P PPPP PPPP
Sbjct: 289 PMHHEPGEHMPP------PPMHHEPGEHMPPP-PMHHEPGEHMPPPPMHHEPGEHMPPPP 341
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 31.9 bits (69), Expect = 0.12
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +1
Query: 451 PPXKXXPPPPPXXXXXFXXXPPPPP 525
PP PPPPP PPPPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPP 29
Score = 31.5 bits (68), Expect = 0.16
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +1
Query: 448 PPPXKXXPPPPPXXXXXFXXXPPPPP 525
PP PPPPP PPPPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 29.9 bits (64), Expect = 0.49
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +2
Query: 509 PPPPPLXXXFXXPPPPPP 562
PPPPP PPPPPP
Sbjct: 12 PPPPPGFEPPSQPPPPPP 29
Score = 29.1 bits (62), Expect = 0.86
Identities = 12/20 (60%), Positives = 12/20 (60%), Gaps = 2/20 (10%)
Frame = +2
Query: 509 PPPPPLXXXFXXP--PPPPP 562
PPPPP F P PPPPP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPP 28
Score = 28.7 bits (61), Expect = 1.1
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +2
Query: 509 PPPPPLXXXFXXPPPPPP 562
PPPP PPPPPP
Sbjct: 13 PPPPGFEPPSQPPPPPPP 30
Score = 27.1 bits (57), Expect = 3.5
Identities = 11/19 (57%), Positives = 11/19 (57%), Gaps = 2/19 (10%)
Frame = +1
Query: 511 PPPPPXXXXFXXP--PPPP 561
PPPPP F P PPPP
Sbjct: 9 PPPPPPPPGFEPPSQPPPP 27
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.9 bits (69), Expect = 0.12
Identities = 18/57 (31%), Positives = 18/57 (31%), Gaps = 2/57 (3%)
Frame = +1
Query: 460 KXXPPPPPXXXXXFXXXPP--PPPXXXXFXXPPPPPXXXXXGXXXXPRXXXXXXPPP 624
K PPPPP PP PPPPP G P PPP
Sbjct: 308 KKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPP 364
Score = 30.7 bits (66), Expect = 0.28
Identities = 22/82 (26%), Positives = 24/82 (29%)
Frame = +3
Query: 381 PXPXKXGKXXPPXXGGGXPPKXXPPXKXXXPPXPXXXXXXSXXPPPPPFXXXFXXPPPPP 560
P P + + PP G PP PP P S P PP PPPP
Sbjct: 315 PPPSRRNRGKPPIGNGSSNSSLPPP-----PPPPRSNAAGSI--PLPPQGRSAPPPPPPR 367
Query: 561 XXXXXGXXXXPXXXXXXXPPPP 626
G P PP
Sbjct: 368 SAPSTGRQPPPLSSSRAVSNPP 389
Score = 30.3 bits (65), Expect = 0.37
Identities = 14/39 (35%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Frame = +1
Query: 448 PPPXKXXPPPPPXXXXXFXXXPPPP-PXXXXFXXPPPPP 561
PP + PPPPP PPP PP PP
Sbjct: 354 PPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPP 392
Score = 29.5 bits (63), Expect = 0.65
Identities = 18/64 (28%), Positives = 20/64 (31%)
Frame = +3
Query: 435 PPKXXPPXKXXXPPXPXXXXXXSXXPPPPPFXXXFXXPPPPPXXXXXGXXXXPXXXXXXX 614
PP PP + P + PPPP PPP G P
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPP---------PPPRSNAAGSIPLPPQGRSAP 361
Query: 615 PPPP 626
PPPP
Sbjct: 362 PPPP 365
Score = 29.5 bits (63), Expect = 0.65
Identities = 16/56 (28%), Positives = 16/56 (28%)
Frame = +1
Query: 427 GXXPXXXPPPXKXXPPPPPXXXXXFXXXPPPPPXXXXFXXPPPPPXXXXXGXXXXP 594
G P PPPPP P PP PPPP G P
Sbjct: 323 GKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378
Score = 28.3 bits (60), Expect = 1.5
Identities = 23/87 (26%), Positives = 23/87 (26%), Gaps = 5/87 (5%)
Frame = +3
Query: 381 PXPXKXGKXXPPXXGGGXPPKXXP---PXKXXXPPXPXXXXXXSXXPPPPPFXXXFXXPP 551
P G P G PP P P PP S P PPP P
Sbjct: 343 PRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPA 402
Query: 552 PPPXXXXXGXXXXPXXXXXXXPP--PP 626
PP P PP PP
Sbjct: 403 LPPLGNASRTSTPPVPTPPSLPPSAPP 429
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 28.7 bits (61), Expect = 1.1
Identities = 15/38 (39%), Positives = 16/38 (42%)
Frame = -3
Query: 560 GGGGGXXKXXXKGGGGGXXXXXXXXXGGGGGXXFXGGG 447
GGG G + G GGG G GGG GGG
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGG 264
Score = 25.8 bits (54), Expect = 8.1
Identities = 15/45 (33%), Positives = 16/45 (35%)
Frame = -1
Query: 559 GGGGGXXKXXXKGGGGGXXEXXXXXXGXGGXXFXXGGXXXGGXPP 425
GGG G + G GGG G GG GG G P
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGGP 271
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 28.7 bits (61), Expect = 1.1
Identities = 14/50 (28%), Positives = 15/50 (30%)
Frame = +2
Query: 413 PXXGGGXXPXXXPPXXKXXPPXPXXXXXXFXXPPPPPLXXXFXXPPPPPP 562
P G P PP P PPPPP+ PP P
Sbjct: 712 PMGTGAVNSPAIKPQVTPAPPTPAPTPAVKHHPPPPPVRSSISPSMPPAP 761
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.3 bits (60), Expect = 1.5
Identities = 13/38 (34%), Positives = 13/38 (34%)
Frame = +1
Query: 448 PPPXKXXPPPPPXXXXXFXXXPPPPPXXXXFXXPPPPP 561
PP PPPP PP P PPP P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/42 (35%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Frame = +1
Query: 436 PXXXPPPXKXXPPP--PPXXXXXFXXXPPPPPXXXXFXXPPP 555
P PPP PPP PP PPP P P P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
Score = 26.6 bits (56), Expect = 4.6
Identities = 12/37 (32%), Positives = 12/37 (32%)
Frame = +1
Query: 448 PPPXKXXPPPPPXXXXXFXXXPPPPPXXXXFXXPPPP 558
PPP PPPP PPP P P
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744
Score = 25.8 bits (54), Expect = 8.1
Identities = 15/58 (25%), Positives = 16/58 (27%)
Frame = +3
Query: 387 PXKXGKXXPPXXGGGXPPKXXPPXKXXXPPXPXXXXXXSXXPPPPPFXXXFXXPPPPP 560
P + PP PP PP PP PPPP P P
Sbjct: 1691 PVRPQSAAPPQMSAPTPPP--PPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
Score = 25.8 bits (54), Expect = 8.1
Identities = 14/40 (35%), Positives = 14/40 (35%), Gaps = 2/40 (5%)
Frame = +1
Query: 448 PPPXKXXPPPPPXXXXXFXXXP--PPPPXXXXFXXPPPPP 561
PPP PPPP P PPPP P P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.1 bits (57), Expect = 3.5
Identities = 17/64 (26%), Positives = 17/64 (26%)
Frame = +3
Query: 435 PPKXXPPXKXXXPPXPXXXXXXSXXPPPPPFXXXFXXPPPPPXXXXXGXXXXPXXXXXXX 614
PP PP PP P PP P PP P P
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIP---SSLPPPAQPAAPVKSPPSAPSLPSAVP 195
Query: 615 PPPP 626
P PP
Sbjct: 196 PMPP 199
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 22.6 bits (46), Expect(2) = 5.3
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +2
Query: 536 FXXPPPPPP 562
F PPPPPP
Sbjct: 944 FPPPPPPPP 952
Score = 21.8 bits (44), Expect(2) = 5.3
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = +2
Query: 545 PPPPPPXXXXGG 580
PPPPPP G
Sbjct: 948 PPPPPPLVSAAG 959
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 26.2 bits (55), Expect = 6.1
Identities = 14/42 (33%), Positives = 16/42 (38%)
Frame = -3
Query: 560 GGGGGXXKXXXKGGGGGXXXXXXXXXGGGGGXXFXGGGXFXG 435
GGG G + +GG G GG GG GG G
Sbjct: 29 GGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGG 70
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,192,362
Number of Sequences: 5004
Number of extensions: 39012
Number of successful extensions: 392
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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