Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_J19
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.87 
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    27   3.5  

>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = -3

Query: 285 KLRQVTNLASIEPTPVTNSKTILEFDSLEIVLNLRDSFAANVLSL 151
           ++  VTN  S    P T+S+ +  FD++  + ++ DSF+ + + L
Sbjct: 559 EVETVTNDPSFSQQPGTHSRILRNFDAISSIDSIPDSFSDSAVDL 603


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 22/74 (29%), Positives = 32/74 (43%)
 Frame = +2

Query: 125 CCLLYVICRSESTFAANESRRLRTISKLSNSRIVFEFVTGVGSMEARFVTCRSFQQIKPP 304
           C  +YV+   EST    E  RL +I   SN++   E +T  G    R        +   P
Sbjct: 96  CEAIYVLQNFESTDFNKEKERLVSIILESNNKSNNELITKNGYGNTRLDLLNQLSEYISP 155

Query: 305 EKXLAPQPTVKGLL 346
           E  L P+  ++ LL
Sbjct: 156 E-ILLPKRRLEHLL 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,580,937
Number of Sequences: 5004
Number of extensions: 38987
Number of successful extensions: 77
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)