Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_J19
         (875 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1259 - 28800954-28802468                                         31   1.2  
05_04_0339 + 20397591-20397627,20398494-20398526,20399210-203994...    29   4.9  
04_03_1029 - 21835441-21835856,21836666-21836852                       28   8.5  

>06_03_1259 - 28800954-28802468
          Length = 504

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = -3

Query: 213 FDSLEIVLNLRDSFAANVLSLLQITYNKQHFHNICGAWYRAYRSTRLHGSSTNXKTKIL 37
           FD+L +   LRD   A+   LL+    ++H+  +  AW R Y    LHG     KT ++
Sbjct: 220 FDTLAVDPALRDDIRAD---LLRFAARREHYARVGRAWKRGY---LLHGPPGTGKTSLV 272


>05_04_0339 +
           20397591-20397627,20398494-20398526,20399210-20399438,
           20402055-20402184,20402251-20402532
          Length = 236

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 16/66 (24%), Positives = 28/66 (42%)
 Frame = +2

Query: 131 LLYVICRSESTFAANESRRLRTISKLSNSRIVFEFVTGVGSMEARFVTCRSFQQIKPPEK 310
           LL V     + F  ++  R R  + ++N   +FE VTG    + +     S  +   P  
Sbjct: 82  LLAVAFYFAARFGFDKEARRRLFNMINNLPTIFEVVTGAAKKQTKEKAPNSTNKPNKPSS 141

Query: 311 XLAPQP 328
            + P+P
Sbjct: 142 KMQPRP 147


>04_03_1029 - 21835441-21835856,21836666-21836852
          Length = 200

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -1

Query: 416 CPPKNQNVSSXGRKVLEPGSRIXTVXPSPSAAALGSFRAA 297
           CPP+NQN+ S     L  G R+      P    L SFR +
Sbjct: 50  CPPQNQNIHS-----LRSGHRVPVDVLPPDGKLLASFRTS 84


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,168,834
Number of Sequences: 37544
Number of extensions: 275079
Number of successful extensions: 658
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)