Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_J18
         (911 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY051762-1|AAK93186.1|  737|Drosophila melanogaster LD29090p pro...    31   2.9  
AE014297-705|AAN14307.1|  737|Drosophila melanogaster CG7602-PB,...    31   2.9  
AE014297-704|AAF54198.1|  737|Drosophila melanogaster CG7602-PA,...    31   2.9  
AB049434-1|BAB15800.1|  737|Drosophila melanogaster dpol-iota pr...    31   2.9  
BT030241-1|ABN49380.1|   74|Drosophila melanogaster IP18279p pro...    29   6.7  
AE014297-4641|AAN14249.1|  659|Drosophila melanogaster CG31019-P...    29   6.7  
U31961-5|AAA84404.1|  424|Drosophila melanogaster protein ( Dros...    29   8.8  
AE014297-2268|AAF55361.3|  417|Drosophila melanogaster CG10349-P...    29   8.8  

>AY051762-1|AAK93186.1|  737|Drosophila melanogaster LD29090p
           protein.
          Length = 737

 Score = 30.7 bits (66), Expect = 2.9
 Identities = 24/79 (30%), Positives = 34/79 (43%)
 Frame = +1

Query: 487 SKXPGTVKRPRCWRFP*APPPLTSITKIDAQVRGGETRQDYKDTRAFPPGSSLVRSPVPT 666
           S  P T       RF    PP T + +ID  +R   TR     +R     SS   SP+P+
Sbjct: 565 STTPSTSTSAPAPRFRTVQPPNTLLQRIDGSLRFVTTR---TASRLSSNASSTASSPLPS 621

Query: 667 LPLTGYLSAFLPSGSVAPF 723
            P+   ++   PS +  PF
Sbjct: 622 -PMDDSIAMSAPSTTTLPF 639


>AE014297-705|AAN14307.1|  737|Drosophila melanogaster CG7602-PB,
           isoform B protein.
          Length = 737

 Score = 30.7 bits (66), Expect = 2.9
 Identities = 24/79 (30%), Positives = 34/79 (43%)
 Frame = +1

Query: 487 SKXPGTVKRPRCWRFP*APPPLTSITKIDAQVRGGETRQDYKDTRAFPPGSSLVRSPVPT 666
           S  P T       RF    PP T + +ID  +R   TR     +R     SS   SP+P+
Sbjct: 565 STTPSTSTSAPAPRFRTVQPPNTLLQRIDGSLRFVTTR---TASRLSSNASSTASSPLPS 621

Query: 667 LPLTGYLSAFLPSGSVAPF 723
            P+   ++   PS +  PF
Sbjct: 622 -PMDDSIAMSAPSTTTLPF 639


>AE014297-704|AAF54198.1|  737|Drosophila melanogaster CG7602-PA,
           isoform A protein.
          Length = 737

 Score = 30.7 bits (66), Expect = 2.9
 Identities = 24/79 (30%), Positives = 34/79 (43%)
 Frame = +1

Query: 487 SKXPGTVKRPRCWRFP*APPPLTSITKIDAQVRGGETRQDYKDTRAFPPGSSLVRSPVPT 666
           S  P T       RF    PP T + +ID  +R   TR     +R     SS   SP+P+
Sbjct: 565 STTPSTSTSAPAPRFRTVQPPNTLLQRIDGSLRFVTTR---TASRLSSNASSTASSPLPS 621

Query: 667 LPLTGYLSAFLPSGSVAPF 723
            P+   ++   PS +  PF
Sbjct: 622 -PMDDSIAMSAPSTTTLPF 639


>AB049434-1|BAB15800.1|  737|Drosophila melanogaster dpol-iota
           protein.
          Length = 737

 Score = 30.7 bits (66), Expect = 2.9
 Identities = 24/79 (30%), Positives = 34/79 (43%)
 Frame = +1

Query: 487 SKXPGTVKRPRCWRFP*APPPLTSITKIDAQVRGGETRQDYKDTRAFPPGSSLVRSPVPT 666
           S  P T       RF    PP T + +ID  +R   TR     +R     SS   SP+P+
Sbjct: 565 STTPSTSTSAPAPRFRTVQPPNTLLQRIDGSLRFVTTR---TASRLSSNASSTASSPLPS 621

Query: 667 LPLTGYLSAFLPSGSVAPF 723
            P+   ++   PS +  PF
Sbjct: 622 -PMDDSIAMSAPSTTTLPF 639


>BT030241-1|ABN49380.1|   74|Drosophila melanogaster IP18279p
           protein.
          Length = 74

 Score = 29.5 bits (63), Expect = 6.7
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 613 DTRAFPPGSSLVRSPVPTLPLTGYLSAFLPSGS 711
           D  A PP  +  RS +P  P++G +++  P+GS
Sbjct: 27  DLPAVPPAPAKQRSTLPEFPISGSVTSTAPAGS 59


>AE014297-4641|AAN14249.1|  659|Drosophila melanogaster CG31019-PA
           protein.
          Length = 659

 Score = 29.5 bits (63), Expect = 6.7
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -3

Query: 687 QVSGKRQGRNRRAHEGASRGK 625
           +V  KR+GRNR AH   SR K
Sbjct: 491 EVRSKRRGRNRHAHHSRSRSK 511


>U31961-5|AAA84404.1|  424|Drosophila melanogaster protein (
           Drosophila melanogasterbithorax complex (BX-C), complete
           sequence. ).
          Length = 424

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 304 ESANARGEAVCVLGALPLPRSLTRCARSFGCG 399
           ES      +VC  G LP+P  L  C +  GCG
Sbjct: 340 ESYQTTSASVCHSGWLPVPGHLAGCGQRRGCG 371


>AE014297-2268|AAF55361.3|  417|Drosophila melanogaster CG10349-PA
           protein.
          Length = 417

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 304 ESANARGEAVCVLGALPLPRSLTRCARSFGCG 399
           ES      +VC  G LP+P  L  C +  GCG
Sbjct: 333 ESYQTTSASVCHSGWLPVPGHLAGCGQRRGCG 364


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,245,986
Number of Sequences: 53049
Number of extensions: 820768
Number of successful extensions: 2031
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2028
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4464466254
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)