Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_J17
         (933 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce...    38   0.002
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc...    29   0.94 
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces...    29   0.94 
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...    29   1.2  
SPAC823.14 |||phosphoric monoester hydrolase |Schizosaccharomyce...    28   2.2  
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom...    27   2.9  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   6.6  
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    26   6.6  
SPCC18B5.06 |erf1|sup45|translation release factor eRF1|Schizosa...    26   6.6  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    26   8.7  

>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = +1

Query: 274 NRISSENWPEFKPKTPFGQMPVLEIDGKQYAQSTAICRYLGRKYGLAGANDEE 432
           +R+     P +   +P G+ P++  DG  Y +S AI  +L RKYG +    EE
Sbjct: 32  DRVDGRAPPAYTKLSPLGKSPIVVDDGVTYIESAAILEHLVRKYGPSFKPSEE 84


>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 29.1 bits (62), Expect = 0.94
 Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
 Frame = +1

Query: 451 NVEFLNDIRA-SAASVHYEKDEAVKAKK--RAELEETKYPFFFEKL------NEILTKNN 603
           N E L DI + +  ++ +  DE  +AK   R    E  +P  F  L       +I+TKN 
Sbjct: 249 NSESLPDILSITLDNLSHPTDEYFEAKAYFRPSAIERNWPKIFVTLLSAWLSTQIITKNR 308

Query: 604 GHIALGKLTWGDFVYAGMYDYLKAMLQKPDL 696
             I L    W D++Y+   D+    +QKP L
Sbjct: 309 TSIRL----WIDYLYSTAVDFYTNWIQKPIL 335


>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 475

 Score = 29.1 bits (62), Expect = 0.94
 Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 2/100 (2%)
 Frame = +1

Query: 307 KPKTPFGQMPVLEIDGKQYAQSTAICRYLGRKYGLAGANDEEAFEIDQNVEFLNDIRASA 486
           KP+ PF    V+E     Y    +        Y     N+ +A+E  Q  + ++D+ A A
Sbjct: 78  KPQWPFTGYSVVENLPSIYEGDVSPEELRWWAYQAKATNNMQAYEQRQK-QLMDDVEAKA 136

Query: 487 ASVHYEKDEAVKAKKRAELEETKYPFFFEK--LNEILTKN 600
           A+V      A    +   + +T Y   F+K   N  +T N
Sbjct: 137 AAVKRSPAAAFDEMRNKLVGKTNYKSIFDKSTSNSTVTSN 176


>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 447 VDLEGLLVIGPGESVLAAEVPADGSA 370
           VD++GL    PG+ +     PADGSA
Sbjct: 719 VDIDGLTTFAPGKPLTLVVHPADGSA 744


>SPAC823.14 |||phosphoric monoester hydrolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 229

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
 Frame = +1

Query: 388 YLGRKYGLAGANDEEAFE--IDQNVEFLNDIRASAASVHYEKDEAVKA-KKRAELEETKY 558
           YL   +G+  AN     +  +D ++ F +       SVH   DEA++  KK   ++ +  
Sbjct: 25  YLTDNFGMGNANRVNLNQQVLDGSISFRDAFAKMLDSVHLSYDEALEVLKKNVAIDPSFK 84

Query: 559 PFF 567
           PF+
Sbjct: 85  PFY 87


>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 594

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = -1

Query: 618 KRDMTVVLRQYLIEFLEKERVFSLLQFRPLLSFDGLVFLVVDRCGT 481
           +R + + LRQY I   E  +++  L F     F   + + +  C T
Sbjct: 416 ERALPIELRQYFIALTENAQIYEELDFEKQRLFSACIEVYLSYCNT 461


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 17/74 (22%), Positives = 33/74 (44%)
 Frame = +1

Query: 181 CRTLSSTISPXKALGESQRLLLAYGGQEFEDNRISSENWPEFKPKTPFGQMPVLEIDGKQ 360
           C +  + +SP  +  + + L+  Y   + E    +S ++ +     P G +P L +DG  
Sbjct: 653 CFSKEAIVSPFISGTKIKNLVYPYDEYQLE----ASSHFSQISNTEPMGCLPELGLDGYG 708

Query: 361 YAQSTAICRYLGRK 402
           Y     I  Y+ R+
Sbjct: 709 YKLFVPINEYIPRR 722


>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
           Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +1

Query: 418 ANDEEAFEIDQNVEFLNDIRASAASVHYEKDEAVKAKKRAELEETKYPFFFE 573
           AND+E   I + +E   ++ A AA    +KD       +   E+ K  F+ E
Sbjct: 333 ANDDERMVISETLEEEENLLALAAKRSKKKDVITVDHSKINYEDFKKDFYVE 384


>SPCC18B5.06 |erf1|sup45|translation release factor
           eRF1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 390

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 640 FVYAGMYDYLKAMLQKPDLEQ 702
           FV  G+YDY+ +M  K DL+Q
Sbjct: 212 FVARGLYDYIFSMAVKLDLKQ 232


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = +3

Query: 24  REFLK--ILGNLLXLYNLWVFCVGLYFSFYFHFSVPTRCDVLLNNYSLLHNNPTMPNVKF 197
           R+F +  I G LL  ++  +     YF+ Y    V   CD +L N+S     P  P V F
Sbjct: 319 RDFFREDICGILLEWFDDLLESHVCYFADYLQIIV---CDEILKNWSPGLEKPAKPEVNF 375

Query: 198 YYFPXQ 215
              P +
Sbjct: 376 NNLPLE 381


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,015,050
Number of Sequences: 5004
Number of extensions: 56530
Number of successful extensions: 194
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)