Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_J12
(910 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe... 30 0.39
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22... 29 0.69
SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch... 29 0.69
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 29 0.91
SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit C... 28 2.1
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 27 2.8
SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces pom... 27 4.9
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ... 27 4.9
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc... 26 6.4
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb... 26 8.5
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo... 26 8.5
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha... 26 8.5
>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 886
Score = 30.3 bits (65), Expect = 0.39
Identities = 30/123 (24%), Positives = 58/123 (47%), Gaps = 4/123 (3%)
Frame = -3
Query: 431 FPERFKCASFLQPLRKVSPFDILLSDSSNFLSIGSVGKPLSVVRPTLLRLSICKFVYSSV 252
F FK S L P + LS S++++ V P S+++ TL + KF S
Sbjct: 723 FGSLFKNVSGL-PAETEIAYHHTLSASNSYVFTDLVDNPDSMLKSTLKYRFVFKF--SPS 779
Query: 251 KPTMFVLLQLSRFSSF---TCEGSLPLRSKMILF-SMFINIPINTLNNFRFANKLFLQGT 84
+P + ++ + + G LP++SKM+L+ S I+ P++++ K + +
Sbjct: 780 QPLSSLGKNKEKYDALLERSSHGVLPVQSKMLLYNSNHISCPLSSIKGVSVNGKRLVYTS 839
Query: 83 KSL 75
++L
Sbjct: 840 RAL 842
>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 29.5 bits (63), Expect = 0.69
Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 6/130 (4%)
Frame = +1
Query: 97 NNL--LANLKLFKVLIGIFMNMEK-RIILERRGRDPSQVKELNLDNCRSTNIVGLTDEYT 267
NN+ + N+ K L +F + R I G D EL + R ++ D
Sbjct: 114 NNIKTIRNINHLKGLENLFFVQNRIRRIENLEGLDRLTNLELGGNKIR---VIENLDTLV 170
Query: 268 NLQILSLNNVGLTTLKGFPTLPMLRKLELSDNRIS--NGLTFLSGCKKLAHLNLSG-NKI 438
NL+ L + +T + F L L L + NRI+ L LS C + +++ +G
Sbjct: 171 NLEKLWVGKNKITKFENFEKLQKLSLLSIQSNRITQFENLACLSHCLRELYVSHNGLTSF 230
Query: 439 KDLETLKPLE 468
+E L+ LE
Sbjct: 231 SGIEVLENLE 240
>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 609
Score = 29.5 bits (63), Expect = 0.69
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +1
Query: 217 LDNCRSTNIVGLTDEYTNLQILSLNNVGLTTLKGFPTLPMLRKLELSDNRISNG 378
LD CR+ + ++ Y +LQIL+ VG + T P +D I++G
Sbjct: 518 LDPCRAMDPKVVSTSYVSLQILNKPYVGFRNINANYTFPTTSYSRRNDEEITSG 571
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 29.1 bits (62), Expect = 0.91
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Frame = +1
Query: 268 NLQILSLNNVGLTTLKGFPTLPMLRKLELSDNRISNGLTFLS-GCKKLAHLNLSGNKIKD 444
+++ L L+N TL +R LEL++ ++ +++ L L+LS N I D
Sbjct: 846 DIRNLYLSNNTFVTLDCKHMFLGVRYLELANVQLKEVPKYIATSMPNLRVLDLSHNYISD 905
Query: 445 LETLKPLE 468
+E+LKPL+
Sbjct: 906 IESLKPLQ 913
>SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit Csn3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 334
Score = 27.9 bits (59), Expect = 2.1
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -3
Query: 236 VLLQLSRFSSFTCEGSLPLRSKMILFSMFINIPINTLNNF 117
+LLQ ++++ C G+ L S + + + IP TL +F
Sbjct: 113 ILLQYCMYAAYHCLGNNDLDSAKVWYFSILYIPTTTLTSF 152
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 27.5 bits (58), Expect = 2.8
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 299 VSQHSKVFRRCLCSENWNCQTIEYQMD 379
+ QH L + NW+CQ I+ MD
Sbjct: 458 LQQHKNTIENQLAAANWDCQKIDEFMD 484
>SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 184
Score = 26.6 bits (56), Expect = 4.9
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3
Query: 302 RPTLLRLSICKFVYSSVKPTMFVLL 228
RP + RL KF YSS++ T+F L+
Sbjct: 107 RPFIRRLPEFKFWYSSMRATLFALV 131
>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
Its3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 742
Score = 26.6 bits (56), Expect = 4.9
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -3
Query: 314 LSVVRPTLLRLSICKFVYSSVKPTMFVL 231
+S V P KFV SS+KPT+ VL
Sbjct: 642 ISAVPPAEYASRFYKFVESSIKPTLLVL 669
>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 898
Score = 26.2 bits (55), Expect = 6.4
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Frame = -3
Query: 368 ILLSDSSNFLSIGSVGKPLSVVRPTLLRLSICKFVYSSVKPTMFVLLQLSR-FSSFTCEG 192
ILL+ S ++ GS + + ++ LL L C F++ ++KP +++L +R E
Sbjct: 206 ILLALSVTLVNSGSGVRAVYIL---LLALGWCLFLFIAIKPLVYLLAVKTRSLKDKPSES 262
Query: 191 SLPLRSKMILFSMF 150
+ + M+L S F
Sbjct: 263 FICIVLSMVLVSAF 276
>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1379
Score = 25.8 bits (54), Expect = 8.5
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = +1
Query: 232 STNIVGLTDEYTNLQILSLNNVGLTTLKGFPTLPMLRKLELSDNRISNGLTFLSGCKKLA 411
S N +G TD Y +L L K F R+ LSD++ + + L KKL+
Sbjct: 811 SENDIGGTDIYP----FALQGAALAAAKDFSR----REASLSDSQSAASMDMLPMKKKLS 862
Query: 412 HLNLSGNK-IKDLET 453
H + S + IK L T
Sbjct: 863 HSSASSTRSIKSLLT 877
>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 25.8 bits (54), Expect = 8.5
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 703 SITEKPEHERTTLPMILYTVYGLLFHMSYLLXRS 804
SI E HE+T + +L TV+ LLF + L S
Sbjct: 205 SIEETFTHEKTLMEELLDTVFRLLFCRGFTLPLS 238
>SPAC926.06c |||leucine-rich repeat protein,
unknown|Schizosaccharomyces pombe|chr 1|||Manual
Length = 621
Score = 25.8 bits (54), Expect = 8.5
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +1
Query: 319 FPTLPMLRKLELSDNRISNGLTFLSGCKKLAHLNLSGNKIKDLET 453
F +L L L+LS N ++ L +L LNL+ NKI T
Sbjct: 352 FLSLQSLVSLDLSGNELTEIPYALGELPQLCSLNLASNKITGCRT 396
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,096,851
Number of Sequences: 5004
Number of extensions: 55502
Number of successful extensions: 167
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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