Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_J11
(927 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces... 86 6e-18
SPCC285.12 |lsm7||U6 snRNP-associated protein Lsm7|Schizosacchar... 54 3e-08
SPAC2F3.17c |lsm6||U6 snRNP-associated protein Lsm6|Schizosaccha... 44 2e-05
SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8 |Schizosacch... 43 5e-05
SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyc... 42 9e-05
SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomy... 41 2e-04
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 31 0.23
SPBC30D10.06 |lsm4||U6 snRNP-associated protein Lsm4|Schizosacch... 30 0.40
SPBC20F10.09 |lsm5||U6 snRNP-associated protein Lsm5|Schizosacch... 29 0.70
SPBC9B6.05c |lsm3||U6 snRNP-associated protein Lsm3|Schizosaccha... 29 1.2
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa... 28 2.1
SPCC1620.01c |lsm2||U6 snRNP-associated protein core protein|Sch... 27 2.8
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 27 3.8
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos... 26 6.6
>SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 77
Score = 86.2 bits (204), Expect = 6e-18
Identities = 37/69 (53%), Positives = 55/69 (79%)
Frame = +3
Query: 120 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMV 299
MSKA P+LKK++D+++ ++LN R V GVLRG+D F+N+VL++S+EE DG++ +G V
Sbjct: 1 MSKAGAPDLKKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDGEKVKIGSV 60
Query: 300 VIRGNSIIM 326
IRGNS+IM
Sbjct: 61 AIRGNSVIM 69
>SPCC285.12 |lsm7||U6 snRNP-associated protein
Lsm7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 113
Score = 54.0 bits (124), Expect = 3e-08
Identities = 23/69 (33%), Positives = 43/69 (62%), Gaps = 7/69 (10%)
Frame = +3
Query: 141 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKD-------GQRNNVGMV 299
+L ++ D+++ GR +TG+L+GFD MNLVLD+ E+ ++ G +G+V
Sbjct: 27 DLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLV 86
Query: 300 VIRGNSIIM 326
V+RG ++++
Sbjct: 87 VVRGTTLVL 95
>SPAC2F3.17c |lsm6||U6 snRNP-associated protein
Lsm6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 75
Score = 44.4 bits (100), Expect = 2e-05
Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Frame = +3
Query: 144 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNV-GMVVIRGNSI 320
L K + KK+ I+L++G G+L D +MNL L E EE +G++ NV G IRGN++
Sbjct: 9 LNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLAL-ERTEEYVNGKKTNVYGDAFIRGNNV 67
Query: 321 I 323
+
Sbjct: 68 L 68
>SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 94
Score = 43.2 bits (97), Expect = 5e-05
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Frame = +3
Query: 144 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEEC----KDGQRNNVGMVVIRG 311
L FM++++ + N GR V G L+GFD NL+L +S E +D + +G+ ++RG
Sbjct: 3 LADFMEQRVQVITNDGRVVLGSLKGFDHTTNLILSDSFERIISMDQDMETIPLGVYLLRG 62
Query: 312 NSIIM 326
++ M
Sbjct: 63 ENVAM 67
>SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 140
Score = 42.3 bits (95), Expect = 9e-05
Identities = 19/64 (29%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Frame = +3
Query: 144 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEEC-KDGQRNNV--GMVVIRGN 314
L ++D+K+ + L G+ + G+LR FD F NL+L ++E D ++ G+ ++RG
Sbjct: 16 LVDYVDRKVIVVLRDGKKLIGILRSFDQFANLMLQYTIERIYVDDMYGDIDRGVYIVRGE 75
Query: 315 SIIM 326
++++
Sbjct: 76 NVVL 79
>SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 84
Score = 41.1 bits (92), Expect = 2e-04
Identities = 15/41 (36%), Positives = 29/41 (70%)
Frame = +3
Query: 204 GVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIM 326
G +RGFD FMN+VLD++V+ + +G ++++G++I +
Sbjct: 40 GQIRGFDEFMNIVLDDAVQVDAKNNKRELGRILLKGDNITL 80
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
Smb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 31.1 bits (67), Expect = 0.23
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +3
Query: 141 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNV 290
++ ++ L++ GR G L FD FMNLVL + +E + ++ NV
Sbjct: 5 KMVSLLNHSLNVTTKDGRTFVGQLLAFDGFMNLVLSD-CQEYRHIKKQNV 53
>SPBC30D10.06 |lsm4||U6 snRNP-associated protein
Lsm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 30.3 bits (65), Expect = 0.40
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +3
Query: 162 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQR-NNVGMVVIRGNSI 320
+ + ++L G G L D +MNL L E + DG + + IRGN+I
Sbjct: 13 RPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIRGNNI 66
>SPBC20F10.09 |lsm5||U6 snRNP-associated protein
Lsm5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 80
Score = 29.5 bits (63), Expect = 0.70
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +3
Query: 144 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE-ECKDGQRNNVGMVVIRGNSI 320
+ K + L + + + R G L GFD ++N+VL + E + G +++ GN +
Sbjct: 11 IDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSEMLLNGNGM 70
Query: 321 IM 326
M
Sbjct: 71 CM 72
>SPBC9B6.05c |lsm3||U6 snRNP-associated protein
Lsm3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 93
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +3
Query: 129 AHPPELKKF-MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 260
A P +L + +D+ + +KL R + G L +D +N+VL ++ E
Sbjct: 8 AEPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEE 52
>SPCC4B3.12 |set9||histone lysine methyltransferase
Set9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 441
Score = 27.9 bits (59), Expect = 2.1
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +2
Query: 335 FRQTLVRLGVGK-KYHQCCKCASCFINK*I*NS 430
FR+ L + GK K +QC C+ FIN+ I NS
Sbjct: 348 FREDLWKKRHGKRKVYQCSNCSQTFINEDIQNS 380
>SPCC1620.01c |lsm2||U6 snRNP-associated protein core
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 96
Score = 27.5 bits (58), Expect = 2.8
Identities = 9/34 (26%), Positives = 22/34 (64%)
Frame = +3
Query: 147 KKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLD 248
K +D +++++L ++ G+L+ D F+N+ L+
Sbjct: 8 KTLIDTEVTVELKNDMSIRGILKSVDQFLNVKLE 41
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 27.1 bits (57), Expect = 3.8
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 241 TKFMNGSKPRNTPVTARPAFSFIDNFLSMNF 149
T+ GSKP NT V A S ++ ++MNF
Sbjct: 919 TQLNTGSKPVNTNVEALTTISSMNQAVNMNF 949
>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 532
Score = 26.2 bits (55), Expect = 6.6
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -2
Query: 335 RFQHYNTVATNYHHPNIVTL 276
R Q T+ HHPNI+TL
Sbjct: 67 RLQREVTILRQLHHPNIITL 86
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,153,664
Number of Sequences: 5004
Number of extensions: 37716
Number of successful extensions: 107
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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