Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_J11
(927 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0043 + 16747103-16747137,16747237-16747259,16748735-167488... 89 5e-18
07_03_1222 - 24983294-24983356,24983695-24983858,24985209-249852... 77 2e-14
08_01_0523 + 4556309-4556311,4556434-4556515,4557528-4557548,455... 51 2e-06
05_07_0342 + 29402867-29402906,29403012-29403052,29403146-294032... 43 3e-04
02_01_0576 - 4270808-4270871,4271548-4271612,4271717-4271754,427... 38 0.011
02_01_0209 - 1399613-1399622,1399719-1399764,1399849-1399927,140... 38 0.015
08_01_0328 + 2959014-2959055,2959336-2959398,2960871-2960949,296... 37 0.020
05_04_0169 - 18694418-18694453,18694516-18694627,18696095-186962... 31 0.98
04_03_0736 - 19145428-19145474,19145608-19145721,19146707-191478... 31 0.98
07_01_0479 + 3606663-3607448 31 1.7
11_06_0609 + 25444941-25444946,25445678-25445765,25446013-254460... 29 5.2
12_01_0184 + 1359376-1359564,1359720-1359774,1360552-1360748,136... 29 6.9
07_01_0631 + 4714843-4715016,4715149-4715249,4715972-4716104,471... 29 6.9
11_06_0189 - 21039217-21039348,21039480-21039738,21039841-210400... 28 9.2
01_01_1089 - 8560008-8560220,8560456-8560977,8561095-8561283,856... 28 9.2
>03_04_0043 +
16747103-16747137,16747237-16747259,16748735-16748856,
16748980-16749042
Length = 80
Score = 89.0 bits (211), Expect = 5e-18
Identities = 41/70 (58%), Positives = 54/70 (77%), Gaps = 1/70 (1%)
Frame = +3
Query: 120 MSKA-HPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGM 296
MS++ PP+LKK+MDKKL IKLNA R + G LRGFD FMNLV+D +V E + ++GM
Sbjct: 1 MSRSGQPPDLKKYMDKKLQIKLNANRVIVGTLRGFDQFMNLVVDNTV-EVNGNDKTDIGM 59
Query: 297 VVIRGNSIIM 326
VV+RGNS++M
Sbjct: 60 VVVRGNSVVM 69
>07_03_1222 -
24983294-24983356,24983695-24983858,24985209-24985231,
24985340-24985374
Length = 94
Score = 77.4 bits (182), Expect = 2e-14
Identities = 43/84 (51%), Positives = 56/84 (66%), Gaps = 15/84 (17%)
Frame = +3
Query: 120 MSKA-HPPELKKFMDKKLS--------------IKLNAGRAVTGVLRGFDPFMNLVLDES 254
MS++ PP+LKK+MDKKL +KLNA R V G LRGFD FMNLV+D +
Sbjct: 1 MSRSGQPPDLKKYMDKKLQTLMVYSFTLFSILPVKLNANRVVIGTLRGFDQFMNLVVDNT 60
Query: 255 VEECKDGQRNNVGMVVIRGNSIIM 326
V E ++N++GMVVIRGNS++M
Sbjct: 61 V-EVNGNEKNDIGMVVIRGNSVVM 83
>08_01_0523 +
4556309-4556311,4556434-4556515,4557528-4557548,
4557824-4557895,4558259-4558311,4558721-4558807
Length = 105
Score = 50.8 bits (116), Expect = 2e-06
Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 15/77 (19%)
Frame = +3
Query: 141 ELKKFMDKKLSIKLNAGR-------AVTGVLRGFDPFMNLVLDESVE---ECKD-----G 275
+L KF+DK + +KL GR +VTG L+G+D +NLVLDE+VE E D G
Sbjct: 10 DLAKFVDKGVQVKLTGGRQVSFYGQSVTGTLKGYDQLLNLVLDEAVEFEREQDDPLKLSG 69
Query: 276 QRNNVGMVVIRGNSIIM 326
+ +G++V RG ++++
Sbjct: 70 KTRQLGLIVCRGTAVML 86
>05_07_0342 +
29402867-29402906,29403012-29403052,29403146-29403220,
29403523-29403648,29404195-29404247,29404385-29404475
Length = 141
Score = 43.2 bits (97), Expect = 3e-04
Identities = 19/41 (46%), Positives = 27/41 (65%)
Frame = +3
Query: 138 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 260
P L+ +D+ +S+ N GR + G LRGFD N++LDES E
Sbjct: 6 PGLESLVDQIISVITNDGRNIVGTLRGFDQATNIILDESHE 46
>02_01_0576 -
4270808-4270871,4271548-4271612,4271717-4271754,
4272060-4272147,4272507-4272625,4273682-4273721
Length = 137
Score = 37.9 bits (84), Expect = 0.011
Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Frame = +3
Query: 57 IQKSTTITLIPVL*YFKKH---ITMSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDP 227
+QKS L P L K +T+ P L K + +KL G G L D
Sbjct: 31 LQKSIEELLYPSLSGENKDNDPVTVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDS 90
Query: 228 FMNLVLDESVEECKDGQ-RNNVGMVVIRGNSII 323
+MNL L + EE DGQ N+G ++IR N+++
Sbjct: 91 YMNLQL-ANTEEYIDGQFSGNLGEILIRCNNVL 122
>02_01_0209 -
1399613-1399622,1399719-1399764,1399849-1399927,
1400004-1400162,1400988-1401050,1401154-1401222
Length = 141
Score = 37.5 bits (83), Expect = 0.015
Identities = 16/39 (41%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Frame = +3
Query: 213 RGFDPFMNLVLDESVE-ECKDGQRNNVGMVVIRGNSIIM 326
+GFD +MNLVLDE+ E K R ++G ++++G++I +
Sbjct: 97 KGFDEYMNLVLDEAEEINIKKDTRKSLGRILLKGDNITL 135
>08_01_0328 +
2959014-2959055,2959336-2959398,2960871-2960949,
2961038-2961083,2961566-2961671
Length = 111
Score = 37.1 bits (82), Expect = 0.020
Identities = 16/44 (36%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Frame = +3
Query: 198 VTGVLRGFDPFMNLVLDESVE-ECKDGQRNNVGMVVIRGNSIIM 326
+ G + GFD +MNLVLD++ E K R ++G ++++G++I +
Sbjct: 30 IEGRIIGFDEYMNLVLDDAEEINVKKDTRKSLGRILLKGDNITL 73
>05_04_0169 -
18694418-18694453,18694516-18694627,18696095-18696243,
18696980-18697033,18697110-18697222,18697323-18697374
Length = 171
Score = 31.5 bits (68), Expect = 0.98
Identities = 15/62 (24%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Frame = +3
Query: 144 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDE--SVEECKDGQR-NNVGMVVIRGN 314
+ + + K+ + + + + G L GFD ++N+VL++ E +G+R + +++ GN
Sbjct: 84 IDRCIGSKIWVIMKGDKELVGTLCGFDVYVNMVLEDVTEYEYTAEGRRITKLDQILLNGN 143
Query: 315 SI 320
+I
Sbjct: 144 NI 145
>04_03_0736 -
19145428-19145474,19145608-19145721,19146707-19147870,
19150251-19150383
Length = 485
Score = 31.5 bits (68), Expect = 0.98
Identities = 15/41 (36%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Frame = +3
Query: 204 GVLRGFDPFMNLVLDESVEECKDGQ-RNNVGMVVIRGNSII 323
G+L D +MN+ ++++ EE +GQ +N G IRGN+++
Sbjct: 433 GILACLDGYMNIAMEQT-EEYVNGQLKNKYGDAFIRGNNVL 472
>07_01_0479 + 3606663-3607448
Length = 261
Score = 30.7 bits (66), Expect = 1.7
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 120 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 260
MS ++ +F++ ++ + + GR + G FD MNLVL + E
Sbjct: 1 MSNPKGSKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 47
>11_06_0609 +
25444941-25444946,25445678-25445765,25446013-25446048,
25446069-25446106,25446219-25446283,25446622-25446685
Length = 98
Score = 29.1 bits (62), Expect = 5.2
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +3
Query: 204 GVLRGFDPFMNLVLDESVEECKDGQ-RNNVGMVVIRGNSII 323
G L D +MNL L + EE DGQ N+G ++IR N+++
Sbjct: 44 GYLVSVDSYMNLQL-ANTEEYIDGQFSGNLGEILIRCNNVL 83
>12_01_0184 +
1359376-1359564,1359720-1359774,1360552-1360748,
1360998-1361119,1361205-1361352,1361501-1361570,
1361675-1361820,1362021-1362113,1362675-1362819,
1363523-1363704,1363748-1363819,1364174-1364277,
1364417-1364473,1364560-1364746,1364836-1364979,
1365092-1365214
Length = 677
Score = 28.7 bits (61), Expect = 6.9
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +2
Query: 302 NSWQQYYNAGIFRQTLVRLGVGKKYH 379
NSWQQY + QTL R G +H
Sbjct: 536 NSWQQYGTPSYWMQTLFRESSGAMFH 561
>07_01_0631 +
4714843-4715016,4715149-4715249,4715972-4716104,
4716471-4716562,4716857-4716956,4717044-4717116,
4717198-4717318,4717778-4717897,4718643-4718733,
4718811-4718839,4719061-4719131,4719217-4719395
Length = 427
Score = 28.7 bits (61), Expect = 6.9
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Frame = +3
Query: 225 PFMNLV--LDESVEECK---DGQRNNVGMVVIRGNSIIMXXXXXXXXXXXXWARNITNAV 389
P +NL DE +E C+ DG + + V +GN ++ + R + +
Sbjct: 192 PLVNLTRSADEKIECCRFSRDGMKPFLFCTVAKGNKVVTVVWNISDWSRIGYKRLLGKPI 251
Query: 390 NVLHVSLINKYKTL 431
+ L VS+ KY L
Sbjct: 252 STLSVSMDGKYLAL 265
>11_06_0189 -
21039217-21039348,21039480-21039738,21039841-21040004,
21040371-21040533,21040615-21042137
Length = 746
Score = 28.3 bits (60), Expect = 9.2
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 222 DPFMNLVLDESVEECKDGQRNNV 290
DPF N ++ + +EEC D QR +
Sbjct: 466 DPFGNYLVQKLLEECSDDQRTRI 488
>01_01_1089 -
8560008-8560220,8560456-8560977,8561095-8561283,
8561377-8561642,8561967-8562111,8562411-8562530,
8562611-8562930,8564161-8564341,8564434-8564580,
8565186-8565497,8566303-8566450,8566592-8566765,
8567385-8567446,8567499-8567571,8567628-8567683,
8568370-8568645,8569541-8569588,8569870-8569991,
8570258-8570413,8571037-8571079,8572624-8572701,
8572972-8573070,8573168-8573209,8573302-8573304
Length = 1264
Score = 28.3 bits (60), Expect = 9.2
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +3
Query: 144 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRN-NVGMVVIRGNSI 320
LK + ++L G G L D +MN+ L E + KDG + + IRGN+I
Sbjct: 7 LKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIRGNTI 66
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,868,797
Number of Sequences: 37544
Number of extensions: 226058
Number of successful extensions: 439
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2647531240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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