Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_J11
(927 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X85373-1|CAA59689.1| 76|Homo sapiens Sm protein G protein. 122 2e-27
CR456918-1|CAG33199.1| 76|Homo sapiens SNRPG protein. 122 2e-27
BC106055-1|AAI06056.1| 76|Homo sapiens small nuclear ribonucle... 122 2e-27
BC071880-1|AAH71880.1| 76|Homo sapiens small nuclear ribonucle... 122 2e-27
BC070166-1|AAH70166.1| 76|Homo sapiens small nuclear ribonucle... 122 2e-27
BC066302-1|AAH66302.1| 76|Homo sapiens small nuclear ribonucle... 122 2e-27
BC022432-1|AAH22432.1| 76|Homo sapiens small nuclear ribonucle... 122 2e-27
BC000070-1|AAH00070.1| 76|Homo sapiens small nuclear ribonucle... 122 2e-27
AC079338-2|AAX81996.1| 76|Homo sapiens unknown protein. 122 2e-27
BC035103-1|AAH35103.1| 64|Homo sapiens SNRPG protein protein. 96 2e-19
BC018621-1|AAH18621.1| 103|Homo sapiens LSM7 homolog, U6 small ... 58 5e-08
AF182293-1|AAD56231.1| 103|Homo sapiens U6 snRNA-associated Sm-... 58 5e-08
AC005258-2|AAG45442.1| 103|Homo sapiens U6 snRNA-associated Sm-... 58 5e-08
BC016026-1|AAH16026.1| 80|Homo sapiens LSM6 homolog, U6 small ... 45 5e-04
AJ238098-1|CAB45869.1| 80|Homo sapiens Lsm6 protein protein. 45 5e-04
AF182292-1|AAD56230.1| 80|Homo sapiens U6 snRNA-associated Sm-... 45 5e-04
AC097372-1|AAY41032.1| 80|Homo sapiens unknown protein. 45 5e-04
AC005258-1|AAC25622.1| 145|Homo sapiens R30783_1 protein. 43 0.001
BC001767-1|AAH01767.1| 133|Homo sapiens LSM1 homolog, U6 small ... 43 0.002
AJ238094-1|CAB45865.1| 133|Homo sapiens Lsm1 protein protein. 43 0.002
AF000177-1|AAB62189.1| 133|Homo sapiens CaSm protein. 43 0.002
BC045532-1|AAH45532.1| 67|Homo sapiens LSM8 protein protein. 42 0.004
BC022440-1|AAH22440.1| 96|Homo sapiens LSM8 homolog, U6 small ... 42 0.004
BC002742-1|AAH02742.1| 96|Homo sapiens LSM8 homolog, U6 small ... 42 0.004
AF182294-1|AAD56232.1| 96|Homo sapiens U6 snRNA-associated Sm-... 42 0.004
AC006389-1|AAD15542.1| 96|Homo sapiens WUGSC:H_RG437B22.1 prot... 42 0.004
BC005938-1|AAH05938.1| 91|Homo sapiens LSM5 homolog, U6 small ... 38 0.052
AJ238097-1|CAB45868.1| 91|Homo sapiens Lsm5 protein protein. 38 0.052
AF182291-1|AAD56229.1| 91|Homo sapiens U6 snRNA-associated Sm-... 38 0.052
X12466-1|CAA31007.1| 92|Homo sapiens protein ( Human mRNA for ... 38 0.068
M37716-1|AAA90926.1| 92|Homo sapiens small nuclear RNA protein... 38 0.068
M21258-1|AAB59365.1| 92|Homo sapiens protein ( Human small nuc... 38 0.068
M15919-1|AAA36621.1| 81|Homo sapiens protein ( Human autoimmun... 38 0.068
BC090951-1|AAH90951.1| 92|Homo sapiens small nuclear ribonucle... 38 0.068
BC002639-1|AAH02639.1| 92|Homo sapiens small nuclear ribonucle... 38 0.068
AL354707-4|CAH73282.1| 92|Homo sapiens small nuclear ribonucle... 38 0.068
X52332-1|CAA36558.1| 439|Homo sapiens zinc finger protein 10 pr... 32 2.6
BC024182-1|AAH24182.1| 573|Homo sapiens zinc finger protein 10 ... 32 2.6
X85372-1|CAA59688.1| 86|Homo sapiens Sm protein F protein. 32 3.4
CR456751-1|CAG33032.1| 86|Homo sapiens SNRPF protein. 32 3.4
BC128453-1|AAI28454.1| 86|Homo sapiens small nuclear ribonucle... 32 3.4
BC128452-1|AAI28453.1| 86|Homo sapiens small nuclear ribonucle... 32 3.4
BC063397-1|AAH63397.2| 86|Homo sapiens SNRPF protein protein. 32 3.4
BC002505-1|AAH02505.3| 86|Homo sapiens small nuclear ribonucle... 32 3.4
AY742712-1|AAU89981.1| 231|Homo sapiens small nuclear ribonucle... 31 7.9
>X85373-1|CAA59689.1| 76|Homo sapiens Sm protein G protein.
Length = 76
Score = 122 bits (293), Expect = 2e-27
Identities = 56/69 (81%), Positives = 61/69 (88%)
Frame = +3
Query: 120 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMV 299
MSKAHPPELKKFMDKKLS+KLN GR V G+LRGFDPFMNLV+DE VE GQ+NN+GMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 300 VIRGNSIIM 326
VIRGNSIIM
Sbjct: 61 VIRGNSIIM 69
>CR456918-1|CAG33199.1| 76|Homo sapiens SNRPG protein.
Length = 76
Score = 122 bits (293), Expect = 2e-27
Identities = 56/69 (81%), Positives = 61/69 (88%)
Frame = +3
Query: 120 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMV 299
MSKAHPPELKKFMDKKLS+KLN GR V G+LRGFDPFMNLV+DE VE GQ+NN+GMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 300 VIRGNSIIM 326
VIRGNSIIM
Sbjct: 61 VIRGNSIIM 69
>BC106055-1|AAI06056.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 122 bits (293), Expect = 2e-27
Identities = 56/69 (81%), Positives = 61/69 (88%)
Frame = +3
Query: 120 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMV 299
MSKAHPPELKKFMDKKLS+KLN GR V G+LRGFDPFMNLV+DE VE GQ+NN+GMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 300 VIRGNSIIM 326
VIRGNSIIM
Sbjct: 61 VIRGNSIIM 69
>BC071880-1|AAH71880.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 122 bits (293), Expect = 2e-27
Identities = 56/69 (81%), Positives = 61/69 (88%)
Frame = +3
Query: 120 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMV 299
MSKAHPPELKKFMDKKLS+KLN GR V G+LRGFDPFMNLV+DE VE GQ+NN+GMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 300 VIRGNSIIM 326
VIRGNSIIM
Sbjct: 61 VIRGNSIIM 69
>BC070166-1|AAH70166.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 122 bits (293), Expect = 2e-27
Identities = 56/69 (81%), Positives = 61/69 (88%)
Frame = +3
Query: 120 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMV 299
MSKAHPPELKKFMDKKLS+KLN GR V G+LRGFDPFMNLV+DE VE GQ+NN+GMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 300 VIRGNSIIM 326
VIRGNSIIM
Sbjct: 61 VIRGNSIIM 69
>BC066302-1|AAH66302.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 122 bits (293), Expect = 2e-27
Identities = 56/69 (81%), Positives = 61/69 (88%)
Frame = +3
Query: 120 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMV 299
MSKAHPPELKKFMDKKLS+KLN GR V G+LRGFDPFMNLV+DE VE GQ+NN+GMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 300 VIRGNSIIM 326
VIRGNSIIM
Sbjct: 61 VIRGNSIIM 69
>BC022432-1|AAH22432.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 122 bits (293), Expect = 2e-27
Identities = 56/69 (81%), Positives = 61/69 (88%)
Frame = +3
Query: 120 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMV 299
MSKAHPPELKKFMDKKLS+KLN GR V G+LRGFDPFMNLV+DE VE GQ+NN+GMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 300 VIRGNSIIM 326
VIRGNSIIM
Sbjct: 61 VIRGNSIIM 69
>BC000070-1|AAH00070.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 122 bits (293), Expect = 2e-27
Identities = 56/69 (81%), Positives = 61/69 (88%)
Frame = +3
Query: 120 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMV 299
MSKAHPPELKKFMDKKLS+KLN GR V G+LRGFDPFMNLV+DE VE GQ+NN+GMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 300 VIRGNSIIM 326
VIRGNSIIM
Sbjct: 61 VIRGNSIIM 69
>AC079338-2|AAX81996.1| 76|Homo sapiens unknown protein.
Length = 76
Score = 122 bits (293), Expect = 2e-27
Identities = 56/69 (81%), Positives = 61/69 (88%)
Frame = +3
Query: 120 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMV 299
MSKAHPPELKKFMDKKLS+KLN GR V G+LRGFDPFMNLV+DE VE GQ+NN+GMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 300 VIRGNSIIM 326
VIRGNSIIM
Sbjct: 61 VIRGNSIIM 69
>BC035103-1|AAH35103.1| 64|Homo sapiens SNRPG protein protein.
Length = 64
Score = 95.9 bits (228), Expect = 2e-19
Identities = 44/57 (77%), Positives = 49/57 (85%)
Frame = +3
Query: 156 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIM 326
MDKKLS+KLN GR V G+LRGFDPFMNLV+DE VE GQ+NN+GMVVIRGNSIIM
Sbjct: 1 MDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIM 57
>BC018621-1|AAH18621.1| 103|Homo sapiens LSM7 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 103
Score = 58.0 bits (134), Expect = 5e-08
Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 8/70 (11%)
Frame = +3
Query: 141 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKD--------GQRNNVGM 296
+L K++DK + +K GR +G+L+GFDP +NLVLD ++E +D +G+
Sbjct: 14 DLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGL 73
Query: 297 VVIRGNSIIM 326
VV RG S+++
Sbjct: 74 VVCRGTSVVL 83
>AF182293-1|AAD56231.1| 103|Homo sapiens U6 snRNA-associated
Sm-like protein LSm7 protein.
Length = 103
Score = 58.0 bits (134), Expect = 5e-08
Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 8/70 (11%)
Frame = +3
Query: 141 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKD--------GQRNNVGM 296
+L K++DK + +K GR +G+L+GFDP +NLVLD ++E +D +G+
Sbjct: 14 DLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGL 73
Query: 297 VVIRGNSIIM 326
VV RG S+++
Sbjct: 74 VVCRGTSVVL 83
>AC005258-2|AAG45442.1| 103|Homo sapiens U6 snRNA-associated
Sm-like protein LSm7 protein.
Length = 103
Score = 58.0 bits (134), Expect = 5e-08
Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 8/70 (11%)
Frame = +3
Query: 141 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKD--------GQRNNVGM 296
+L K++DK + +K GR +G+L+GFDP +NLVLD ++E +D +G+
Sbjct: 14 DLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGL 73
Query: 297 VVIRGNSIIM 326
VV RG S+++
Sbjct: 74 VVCRGTSVVL 83
>BC016026-1|AAH16026.1| 80|Homo sapiens LSM6 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 80
Score = 44.8 bits (101), Expect = 5e-04
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Frame = +3
Query: 114 ITMSKAHPPE-LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQ-RNN 287
+++ K P + LK+ + + + +KLN+G GVL D +MN+ L E EE +GQ +N
Sbjct: 1 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIAL-EQTEEYVNGQLKNK 59
Query: 288 VGMVVIRGNSII 323
G IRGN+++
Sbjct: 60 YGDAFIRGNNVL 71
>AJ238098-1|CAB45869.1| 80|Homo sapiens Lsm6 protein protein.
Length = 80
Score = 44.8 bits (101), Expect = 5e-04
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Frame = +3
Query: 114 ITMSKAHPPE-LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQ-RNN 287
+++ K P + LK+ + + + +KLN+G GVL D +MN+ L E EE +GQ +N
Sbjct: 1 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIAL-EQTEEYVNGQLKNK 59
Query: 288 VGMVVIRGNSII 323
G IRGN+++
Sbjct: 60 YGDAFIRGNNVL 71
>AF182292-1|AAD56230.1| 80|Homo sapiens U6 snRNA-associated
Sm-like protein LSm6 protein.
Length = 80
Score = 44.8 bits (101), Expect = 5e-04
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Frame = +3
Query: 114 ITMSKAHPPE-LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQ-RNN 287
+++ K P + LK+ + + + +KLN+G GVL D +MN+ L E EE +GQ +N
Sbjct: 1 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIAL-EQTEEYVNGQLKNK 59
Query: 288 VGMVVIRGNSII 323
G IRGN+++
Sbjct: 60 YGDAFIRGNNVL 71
>AC097372-1|AAY41032.1| 80|Homo sapiens unknown protein.
Length = 80
Score = 44.8 bits (101), Expect = 5e-04
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Frame = +3
Query: 114 ITMSKAHPPE-LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQ-RNN 287
+++ K P + LK+ + + + +KLN+G GVL D +MN+ L E EE +GQ +N
Sbjct: 1 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIAL-EQTEEYVNGQLKNK 59
Query: 288 VGMVVIRGNSII 323
G IRGN+++
Sbjct: 60 YGDAFIRGNNVL 71
>AC005258-1|AAC25622.1| 145|Homo sapiens R30783_1 protein.
Length = 145
Score = 43.2 bits (97), Expect = 0.001
Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 8/54 (14%)
Frame = +3
Query: 189 GRAVTGVLRGFDPFMNLVLDESVEECKD--------GQRNNVGMVVIRGNSIIM 326
GR +G+L+GFDP +NLVLD ++E +D +G+VV RG S+++
Sbjct: 72 GRPRSGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLVVCRGTSVVL 125
>BC001767-1|AAH01767.1| 133|Homo sapiens LSM1 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 133
Score = 42.7 bits (96), Expect = 0.002
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Frame = +3
Query: 156 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNN---VGMVVIRGNSIIM 326
+DKK + L GR + G LR D F NLVL ++VE G++ G+ V+RG ++++
Sbjct: 14 IDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVL 73
>AJ238094-1|CAB45865.1| 133|Homo sapiens Lsm1 protein protein.
Length = 133
Score = 42.7 bits (96), Expect = 0.002
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Frame = +3
Query: 156 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNN---VGMVVIRGNSIIM 326
+DKK + L GR + G LR D F NLVL ++VE G++ G+ V+RG ++++
Sbjct: 14 IDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVL 73
>AF000177-1|AAB62189.1| 133|Homo sapiens CaSm protein.
Length = 133
Score = 42.7 bits (96), Expect = 0.002
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Frame = +3
Query: 156 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNN---VGMVVIRGNSIIM 326
+DKK + L GR + G LR D F NLVL ++VE G++ G+ V+RG ++++
Sbjct: 14 IDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVL 73
>BC045532-1|AAH45532.1| 67|Homo sapiens LSM8 protein protein.
Length = 67
Score = 41.5 bits (93), Expect = 0.004
Identities = 18/63 (28%), Positives = 39/63 (61%), Gaps = 4/63 (6%)
Frame = +3
Query: 144 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRN----NVGMVVIRG 311
L+ ++++ +++ + GR + G L+GFD +NL+LDES E + +G+ ++RG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 312 NSI 320
+++
Sbjct: 65 DNV 67
>BC022440-1|AAH22440.1| 96|Homo sapiens LSM8 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 96
Score = 41.5 bits (93), Expect = 0.004
Identities = 18/63 (28%), Positives = 39/63 (61%), Gaps = 4/63 (6%)
Frame = +3
Query: 144 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRN----NVGMVVIRG 311
L+ ++++ +++ + GR + G L+GFD +NL+LDES E + +G+ ++RG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 312 NSI 320
+++
Sbjct: 65 DNV 67
>BC002742-1|AAH02742.1| 96|Homo sapiens LSM8 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 96
Score = 41.5 bits (93), Expect = 0.004
Identities = 18/63 (28%), Positives = 39/63 (61%), Gaps = 4/63 (6%)
Frame = +3
Query: 144 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRN----NVGMVVIRG 311
L+ ++++ +++ + GR + G L+GFD +NL+LDES E + +G+ ++RG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 312 NSI 320
+++
Sbjct: 65 DNV 67
>AF182294-1|AAD56232.1| 96|Homo sapiens U6 snRNA-associated
Sm-like protein LSm8 protein.
Length = 96
Score = 41.5 bits (93), Expect = 0.004
Identities = 18/63 (28%), Positives = 39/63 (61%), Gaps = 4/63 (6%)
Frame = +3
Query: 144 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRN----NVGMVVIRG 311
L+ ++++ +++ + GR + G L+GFD +NL+LDES E + +G+ ++RG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 312 NSI 320
+++
Sbjct: 65 DNV 67
>AC006389-1|AAD15542.1| 96|Homo sapiens WUGSC:H_RG437B22.1
protein.
Length = 96
Score = 41.5 bits (93), Expect = 0.004
Identities = 18/63 (28%), Positives = 39/63 (61%), Gaps = 4/63 (6%)
Frame = +3
Query: 144 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRN----NVGMVVIRG 311
L+ ++++ +++ + GR + G L+GFD +NL+LDES E + +G+ ++RG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 312 NSI 320
+++
Sbjct: 65 DNV 67
>BC005938-1|AAH05938.1| 91|Homo sapiens LSM5 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 91
Score = 37.9 bits (84), Expect = 0.052
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Frame = +3
Query: 123 SKAHPPEL-KKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDE--SVEECKDGQR-NNV 290
S+ P EL K + ++ I + + + + G L GFD F+N+VL++ E +G+R +
Sbjct: 10 SQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 69
Query: 291 GMVVIRGNSIIM 326
+++ GN+I M
Sbjct: 70 DQILLNGNNITM 81
>AJ238097-1|CAB45868.1| 91|Homo sapiens Lsm5 protein protein.
Length = 91
Score = 37.9 bits (84), Expect = 0.052
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Frame = +3
Query: 123 SKAHPPEL-KKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDE--SVEECKDGQR-NNV 290
S+ P EL K + ++ I + + + + G L GFD F+N+VL++ E +G+R +
Sbjct: 10 SQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 69
Query: 291 GMVVIRGNSIIM 326
+++ GN+I M
Sbjct: 70 DQILLNGNNITM 81
>AF182291-1|AAD56229.1| 91|Homo sapiens U6 snRNA-associated
Sm-like protein LSm5 protein.
Length = 91
Score = 37.9 bits (84), Expect = 0.052
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Frame = +3
Query: 123 SKAHPPEL-KKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDE--SVEECKDGQR-NNV 290
S+ P EL K + ++ I + + + + G L GFD F+N+VL++ E +G+R +
Sbjct: 10 SQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 69
Query: 291 GMVVIRGNSIIM 326
+++ GN+I M
Sbjct: 70 DQILLNGNNITM 81
>X12466-1|CAA31007.1| 92|Homo sapiens protein ( Human mRNA for
snRNP E protein. ).
Length = 92
Score = 37.5 bits (83), Expect = 0.068
Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Frame = +3
Query: 198 VTGVLRGFDPFMNLVLDESVE-ECKDGQRNNVGMVVIRGNSIIM 326
+ G + GFD +MNLVLD++ E K R +G ++++G++I +
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITL 86
>M37716-1|AAA90926.1| 92|Homo sapiens small nuclear RNA protein
(snRNP E) protein.
Length = 92
Score = 37.5 bits (83), Expect = 0.068
Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Frame = +3
Query: 198 VTGVLRGFDPFMNLVLDESVE-ECKDGQRNNVGMVVIRGNSIIM 326
+ G + GFD +MNLVLD++ E K R +G ++++G++I +
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITL 86
>M21258-1|AAB59365.1| 92|Homo sapiens protein ( Human small
nuclear ribonucleoprotein (snRNP) E gene, exon 5 and Alu
repeats copy N and O. ).
Length = 92
Score = 37.5 bits (83), Expect = 0.068
Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Frame = +3
Query: 198 VTGVLRGFDPFMNLVLDESVE-ECKDGQRNNVGMVVIRGNSIIM 326
+ G + GFD +MNLVLD++ E K R +G ++++G++I +
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITL 86
>M15919-1|AAA36621.1| 81|Homo sapiens protein ( Human autoimmune
antigen small nuclear ribonucleoprotein E mRNA. ).
Length = 81
Score = 37.5 bits (83), Expect = 0.068
Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Frame = +3
Query: 198 VTGVLRGFDPFMNLVLDESVE-ECKDGQRNNVGMVVIRGNSIIM 326
+ G + GFD +MNLVLD++ E K R +G ++++G++I +
Sbjct: 32 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITL 75
>BC090951-1|AAH90951.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E protein.
Length = 92
Score = 37.5 bits (83), Expect = 0.068
Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Frame = +3
Query: 198 VTGVLRGFDPFMNLVLDESVE-ECKDGQRNNVGMVVIRGNSIIM 326
+ G + GFD +MNLVLD++ E K R +G ++++G++I +
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITL 86
>BC002639-1|AAH02639.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E protein.
Length = 92
Score = 37.5 bits (83), Expect = 0.068
Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Frame = +3
Query: 198 VTGVLRGFDPFMNLVLDESVE-ECKDGQRNNVGMVVIRGNSIIM 326
+ G + GFD +MNLVLD++ E K R +G ++++G++I +
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITL 86
>AL354707-4|CAH73282.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E-like 1 protein.
Length = 92
Score = 37.5 bits (83), Expect = 0.068
Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Frame = +3
Query: 198 VTGVLRGFDPFMNLVLDESVE-ECKDGQRNNVGMVVIRGNSIIM 326
+ G + GFD +MNLVLD++ E K R +G ++++G++I +
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITL 86
>X52332-1|CAA36558.1| 439|Homo sapiens zinc finger protein 10
protein.
Length = 439
Score = 32.3 bits (70), Expect = 2.6
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +2
Query: 284 QCWDGGNSWQQYYNAGIFRQTLVRLGVGKKYHQCCKCASCFINK 415
+C D G S+ Q +A I Q R+ G+K ++CC+C FI K
Sbjct: 328 ECHDCGKSFSQS-SALIVHQ---RIHTGEKPYECCQCGKAFIRK 367
>BC024182-1|AAH24182.1| 573|Homo sapiens zinc finger protein 10
protein.
Length = 573
Score = 32.3 bits (70), Expect = 2.6
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +2
Query: 284 QCWDGGNSWQQYYNAGIFRQTLVRLGVGKKYHQCCKCASCFINK 415
+C D G S+ Q +A I Q R+ G+K ++CC+C FI K
Sbjct: 462 ECHDCGKSFSQS-SALIVHQ---RIHTGEKPYECCQCGKAFIRK 501
>X85372-1|CAA59688.1| 86|Homo sapiens Sm protein F protein.
Length = 86
Score = 31.9 bits (69), Expect = 3.4
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +3
Query: 138 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNS 317
P L K + +KL G G L D +MN+ L + E ++G V+IR N+
Sbjct: 9 PFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNN 68
Query: 318 II 323
++
Sbjct: 69 VL 70
>CR456751-1|CAG33032.1| 86|Homo sapiens SNRPF protein.
Length = 86
Score = 31.9 bits (69), Expect = 3.4
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +3
Query: 138 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNS 317
P L K + +KL G G L D +MN+ L + E ++G V+IR N+
Sbjct: 9 PFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNN 68
Query: 318 II 323
++
Sbjct: 69 VL 70
>BC128453-1|AAI28454.1| 86|Homo sapiens small nuclear
ribonucleoprotein polypeptide F protein.
Length = 86
Score = 31.9 bits (69), Expect = 3.4
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +3
Query: 138 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNS 317
P L K + +KL G G L D +MN+ L + E ++G V+IR N+
Sbjct: 9 PFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNN 68
Query: 318 II 323
++
Sbjct: 69 VL 70
>BC128452-1|AAI28453.1| 86|Homo sapiens small nuclear
ribonucleoprotein polypeptide F protein.
Length = 86
Score = 31.9 bits (69), Expect = 3.4
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +3
Query: 138 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNS 317
P L K + +KL G G L D +MN+ L + E ++G V+IR N+
Sbjct: 9 PFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNN 68
Query: 318 II 323
++
Sbjct: 69 VL 70
>BC063397-1|AAH63397.2| 86|Homo sapiens SNRPF protein protein.
Length = 86
Score = 31.9 bits (69), Expect = 3.4
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +3
Query: 138 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNS 317
P L K + +KL G G L D +MN+ L + E ++G V+IR N+
Sbjct: 9 PFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNN 68
Query: 318 II 323
++
Sbjct: 69 VL 70
>BC002505-1|AAH02505.3| 86|Homo sapiens small nuclear
ribonucleoprotein polypeptide F protein.
Length = 86
Score = 31.9 bits (69), Expect = 3.4
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +3
Query: 138 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNS 317
P L K + +KL G G L D +MN+ L + E ++G V+IR N+
Sbjct: 9 PFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNN 68
Query: 318 II 323
++
Sbjct: 69 VL 70
>AY742712-1|AAU89981.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptide B protein.
Length = 231
Score = 30.7 bits (66), Expect = 7.9
Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 10/78 (12%)
Frame = +3
Query: 120 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVL---DE-------SVEECK 269
M+ ++ + +D ++ L GR G + FD MNL+L DE + E+ +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSEQAE 60
Query: 270 DGQRNNVGMVVIRGNSII 323
++ +G+V++RG +++
Sbjct: 61 REEKRVLGLVLLRGENLV 78
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,757,560
Number of Sequences: 237096
Number of extensions: 1321665
Number of successful extensions: 3738
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 2689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3738
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12103451996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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