Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_J11
         (927 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF303264-1|AAG50222.1|   77|Caenorhabditis elegans SM protein G ...   105   4e-23
AC024201-5|AAF36015.1|   77|Caenorhabditis elegans Small nuclear...   105   4e-23
Z69385-6|CAA93428.1|  104|Caenorhabditis elegans Hypothetical pr...    55   8e-08
AC025726-13|AAK73913.1|   77|Caenorhabditis elegans Lsm sm-like ...    48   1e-05
Z69302-4|CAA93263.1|  125|Caenorhabditis elegans Hypothetical pr...    41   0.001
AC084197-12|AAL00875.1|   98|Caenorhabditis elegans Lsm sm-like ...    40   0.003
Z98866-12|CAB11551.1|   90|Caenorhabditis elegans Hypothetical p...    39   0.006
Z81071-3|CAB03013.1|   91|Caenorhabditis elegans Hypothetical pr...    38   0.010
L14429-11|AAA28212.1|   85|Caenorhabditis elegans Small nuclear ...    36   0.031
AL132865-8|CAB60606.2|  102|Caenorhabditis elegans Hypothetical ...    36   0.054
Z92773-2|CAB07132.1|  160|Caenorhabditis elegans Hypothetical pr...    32   0.67 
U23937-1|AAA65451.1|   71|Caenorhabditis elegans small nuclear r...    29   4.7  
AL117204-26|CAB55132.1|  136|Caenorhabditis elegans Hypothetical...    29   4.7  
U20864-9|AAC46661.1|  123|Caenorhabditis elegans Lsm sm-like pro...    29   6.2  

>AF303264-1|AAG50222.1|   77|Caenorhabditis elegans SM protein G
           protein.
          Length = 77

 Score =  105 bits (252), Expect = 4e-23
 Identities = 45/69 (65%), Positives = 58/69 (84%)
 Frame = +3

Query: 120 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMV 299
           MSK HPPELKK+MDK++ +KLN  R V+G+LRGFDPFMN+V+DE+VE  KDG   N+GM 
Sbjct: 1   MSKTHPPELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKDGGSVNLGMT 60

Query: 300 VIRGNSIIM 326
           VIRGNS+++
Sbjct: 61  VIRGNSVVI 69


>AC024201-5|AAF36015.1|   77|Caenorhabditis elegans Small nuclear
           ribonucleoproteinprotein 7 protein.
          Length = 77

 Score =  105 bits (252), Expect = 4e-23
 Identities = 45/69 (65%), Positives = 58/69 (84%)
 Frame = +3

Query: 120 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMV 299
           MSK HPPELKK+MDK++ +KLN  R V+G+LRGFDPFMN+V+DE+VE  KDG   N+GM 
Sbjct: 1   MSKTHPPELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKDGGSVNLGMT 60

Query: 300 VIRGNSIIM 326
           VIRGNS+++
Sbjct: 61  VIRGNSVVI 69


>Z69385-6|CAA93428.1|  104|Caenorhabditis elegans Hypothetical
           protein ZK593.7 protein.
          Length = 104

 Score = 54.8 bits (126), Expect = 8e-08
 Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 8/68 (11%)
 Frame = +3

Query: 141 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNV--------GM 296
           +L +F+DK++ +K   GR  +GVLRGFD  +N+VLD+  E  +D Q  +V        G+
Sbjct: 15  DLTRFLDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCREYLRDPQNPSVVGDETRQLGL 74

Query: 297 VVIRGNSI 320
           +V RG +I
Sbjct: 75  IVARGTAI 82


>AC025726-13|AAK73913.1|   77|Caenorhabditis elegans Lsm sm-like
           protein protein 6 protein.
          Length = 77

 Score = 48.0 bits (109), Expect = 1e-05
 Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
 Frame = +3

Query: 120 MSKAHPPE--LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQ-RNNV 290
           MSK   P   LKK + K + +KLN+G    G+L   D +MN+ L E  EE  +GQ +N  
Sbjct: 1   MSKRQNPAEFLKKVIGKPVVVKLNSGVDYRGILACLDGYMNIAL-EQTEEYSNGQLQNKY 59

Query: 291 GMVVIRGNSII 323
           G   IRGN+++
Sbjct: 60  GDAFIRGNNVL 70


>Z69302-4|CAA93263.1|  125|Caenorhabditis elegans Hypothetical
           protein F40F8.9 protein.
          Length = 125

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 7/62 (11%)
 Frame = +3

Query: 156 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEE-------CKDGQRNNVGMVVIRGN 314
           +DKKL + L  GR + G LR  D F NL+L++ VE        C+ GQ    G ++IRG 
Sbjct: 18  LDKKLLVVLRDGRKLIGFLRSIDQFANLILEDVVERTFVEKYFCETGQ----GFMLIRGE 73

Query: 315 SI 320
           ++
Sbjct: 74  NV 75


>AC084197-12|AAL00875.1|   98|Caenorhabditis elegans Lsm sm-like
           protein protein 8 protein.
          Length = 98

 Score = 39.9 bits (89), Expect = 0.003
 Identities = 18/63 (28%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
 Frame = +3

Query: 144 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDE----SVEECKDGQRNNVGMVVIRG 311
           L  +M++ +++    GR + G+L+GFD  +NLV+++    S  E +      +G+ +IRG
Sbjct: 5   LDAYMNRMVNVVTGDGRVIVGLLKGFDQLINLVIEDAHERSYSETEGVLTTPLGLYIIRG 64

Query: 312 NSI 320
            ++
Sbjct: 65  ENV 67


>Z98866-12|CAB11551.1|   90|Caenorhabditis elegans Hypothetical
           protein Y49E10.15 protein.
          Length = 90

 Score = 38.7 bits (86), Expect = 0.006
 Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
 Frame = +3

Query: 204 GVLRGFDPFMNLVLDESVE-ECKDGQRNNVGMVVIRGNSIIM 326
           G + GFD FMN+V DE+ E   K   RN +G ++++G++I +
Sbjct: 41  GYIIGFDEFMNVVFDEAEEVNMKTKGRNKIGRILLKGDNITL 82


>Z81071-3|CAB03013.1|   91|Caenorhabditis elegans Hypothetical
           protein F28F8.3 protein.
          Length = 91

 Score = 37.9 bits (84), Expect = 0.010
 Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
 Frame = +3

Query: 144 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESV--EECKDGQR-NNVGMVVIRGN 314
           + K +  K+ + +   + + G L GFD ++N+VL++ V  E   DG+R   +  +++ GN
Sbjct: 18  IDKCIGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEYENTADGKRMTKLDTILLNGN 77

Query: 315 SIIM 326
            I M
Sbjct: 78  HITM 81


>L14429-11|AAA28212.1|   85|Caenorhabditis elegans Small nuclear
           ribonucleoproteinprotein 5 protein.
          Length = 85

 Score = 36.3 bits (80), Expect = 0.031
 Identities = 20/62 (32%), Positives = 30/62 (48%)
 Frame = +3

Query: 138 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNS 317
           P L     K +  KL  G    GVL   D +MNL L  + E      + N+G ++IR N+
Sbjct: 11  PFLNSLTGKFVVCKLKWGMEYKGVLVAVDSYMNLQLAHAEEYIDGNSQGNLGEILIRCNN 70

Query: 318 II 323
           ++
Sbjct: 71  VL 72


>AL132865-8|CAB60606.2|  102|Caenorhabditis elegans Hypothetical
           protein Y62E10A.12 protein.
          Length = 102

 Score = 35.5 bits (78), Expect = 0.054
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
 Frame = +3

Query: 105 KKHITMSKA--HPPELKKF-MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEE 263
           KK +T+S     P +L +  +D+++ +K+   R + G LR FD  +N+VL E VEE
Sbjct: 5   KKEVTLSATVEEPLDLLRLSLDERVYVKMRNDRELRGRLRAFDQHLNMVLSE-VEE 59


>Z92773-2|CAB07132.1|  160|Caenorhabditis elegans Hypothetical
           protein W08E3.1 protein.
          Length = 160

 Score = 31.9 bits (69), Expect = 0.67
 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 10/80 (12%)
 Frame = +3

Query: 114 ITMSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECK-------- 269
           +T+SK +  ++   ++ ++ I L  GR   G  + FD  MN++L E  E  +        
Sbjct: 1   MTISKNN--KMMAHLNYRMKIILQDGRTFIGFFKAFDKHMNILLAECEEHRQIKPKAGKK 58

Query: 270 -DGQRNNV-GMVVIRGNSII 323
            DG+   + G+V++RG  I+
Sbjct: 59  TDGEEKRILGLVLVRGEHIV 78


>U23937-1|AAA65451.1|   71|Caenorhabditis elegans small nuclear
           ribonucleoprotein protein.
          Length = 71

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +3

Query: 168 LSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSI 320
           ++++   G    G L   +  MN  L E+V   +DG+ + +  V IRGN I
Sbjct: 5   VTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDGRSHQLDNVFIRGNKI 55


>AL117204-26|CAB55132.1|  136|Caenorhabditis elegans Hypothetical
           protein Y116A8C.42 protein.
          Length = 136

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +3

Query: 168 LSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSI 320
           ++++   G    G L   +  MN  L E+V   +DG+ + +  V IRGN I
Sbjct: 19  VTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDGRSHQLDNVFIRGNKI 69


>U20864-9|AAC46661.1|  123|Caenorhabditis elegans Lsm sm-like
           protein protein 4 protein.
          Length = 123

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +3

Query: 144 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQR-NNVGMVVIRGNSI 320
           LK   +  + ++L  G    G L+  D +MN+ L + +   KDG +   +    +RG++I
Sbjct: 8   LKTAQNHPMLVELKNGETYNGHLKACDSWMNIHLVDVIFTSKDGDKFFKMSEAYVRGSTI 67


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,163,299
Number of Sequences: 27780
Number of extensions: 216742
Number of successful extensions: 401
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2381234086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)