Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_J10
         (908 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    36   0.011
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    33   0.056
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    32   0.13 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    31   0.30 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.30 
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    29   0.69 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    28   2.1  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.9  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    26   6.4  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 35.5 bits (78), Expect = 0.011
 Identities = 20/62 (32%), Positives = 21/62 (33%)
 Frame = -3

Query: 552 PPXPPLXVXXXXXXGXXMGXPXXPXXGGVVPXKKXXPPPPXGXXFXXEXAPPPPPXXXDX 373
           PP PP  +            P  P  GG  P     PPPP G        PPPPP     
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPP-----PPPPPGVAGAGPPPPPPPPPAVSA 787

Query: 372 XG 367
            G
Sbjct: 788 GG 789



 Score = 32.3 bits (70), Expect = 0.098
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = +1

Query: 631 PX*GXPPKAPPXXXXXPXGXPPXXPPPP 714
           P  G PP  PP       G PP  PPPP
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 29.5 bits (63), Expect = 0.69
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -2

Query: 448 PPPPXXGXXFXGRXSPPPPP 389
           PPPP  G    G   PPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPPP 782



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 17/55 (30%), Positives = 17/55 (30%)
 Frame = +1

Query: 595 PXPPRGEXXXKXPX*GXPPKAPPXXXXXPXGXPPXXPPPPXRPKNXXXVPPXXTP 759
           P PP        P     P  PP       G PP  PPPP         PP   P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIM---GGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 33.1 bits (72), Expect = 0.056
 Identities = 30/89 (33%), Positives = 31/89 (34%), Gaps = 2/89 (2%)
 Frame = -1

Query: 758 GVXXGGTXXXFFGRXGGGGXXGGXPXGXXXXXGGAFGGXP*XGXFXXFSPRGGXGXXGXX 579
           G   GG+     G  G GG  G    G      G FGG P  G F       G G  G  
Sbjct: 191 GGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGP--GGFEGGPGGFGGGPGGFG 248

Query: 578 GGXPPFXGXRXXPPXXXXGVPG--GGXXW 498
           GG   F G     P    G PG  GG  W
Sbjct: 249 GGLGGFGGG----PGGFGGGPGGHGGPGW 273


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 18/61 (29%), Positives = 18/61 (29%)
 Frame = +1

Query: 574  PPXXPXXPXPPRGEXXXKXPX*GXPPKAPPXXXXXPXGXPPXXPPPPXRPKNXXXVPPXX 753
            P   P  P P         P  G PP   P     P   P   PP P        VPP  
Sbjct: 1155 PSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPS 1214

Query: 754  T 756
            T
Sbjct: 1215 T 1215



 Score = 27.5 bits (58), Expect = 2.8
 Identities = 19/65 (29%), Positives = 19/65 (29%)
 Frame = +1

Query: 574  PPXXPXXPXPPRGEXXXKXPX*GXPPKAPPXXXXXPXGXPPXXPPPPXRPKNXXXVPPXX 753
            P   P  P P         P  G PP   P     P   P   PP    PK     PP  
Sbjct: 1117 PSGAPPVPKPSVAAPPVPVPS-GAPPVPKPSVAAPPVPAPSGAPPV---PKPSVAAPPVP 1172

Query: 754  TPXXG 768
             P  G
Sbjct: 1173 APSSG 1177



 Score = 26.2 bits (55), Expect = 6.4
 Identities = 20/67 (29%), Positives = 21/67 (31%), Gaps = 3/67 (4%)
 Frame = +1

Query: 568  GXPPXXPXXPXPPRGEXXXKXPX*GXPPKAPPXXXXXPXGXPPXXPP---PPXRPKNXXX 738
            G PP  P    PP  +     P    P  APP       G PP   P    P  P     
Sbjct: 1187 GVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPP-VPTPSAGLPPVPVPTAKAPPVPAPSSE 1245

Query: 739  VPPXXTP 759
             P   TP
Sbjct: 1246 APSVSTP 1252


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 21/60 (35%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
 Frame = +1

Query: 574  PPXXPXXPXPPRGEXXXKXPX*---GXPPKAPPXXXXXPXGXPPXXPPPPXRPKNXXXVP 744
            PP  P    PP+       P       PP APP     P G PP  PPPP    +   VP
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPP----MPAG-PPSAPPPPLPASSAPSVP 1744



 Score = 29.1 bits (62), Expect = 0.91
 Identities = 15/53 (28%), Positives = 16/53 (30%)
 Frame = +1

Query: 565  GGXPPXXPXXPXPPRGEXXXKXPX*GXPPKAPPXXXXXPXGXPPXXPPPPXRP 723
            GG  P  P    P R +           P  PP     P   PP    PP  P
Sbjct: 1679 GGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAP 1731


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 13/35 (37%), Positives = 13/35 (37%)
 Frame = +1

Query: 640 GXPPKAPPXXXXXPXGXPPXXPPPPXRPKNXXXVP 744
           G PP  PP     P   PP  PPP    K     P
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41



 Score = 30.3 bits (65), Expect = 0.39
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = +1

Query: 646 PPKAPPXXXXXPXGXPPXXPPPPXRP 723
           PP  PP     P   PP  PPPP  P
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPP 30



 Score = 29.5 bits (63), Expect = 0.69
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -3

Query: 462 PXKKXXPPPPXGXXFXXEXAPPPPP 388
           P     PPPP G     +  PPPPP
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPP 30



 Score = 26.2 bits (55), Expect = 6.4
 Identities = 14/39 (35%), Positives = 14/39 (35%)
 Frame = +1

Query: 631 PX*GXPPKAPPXXXXXPXGXPPXXPPPPXRPKNXXXVPP 747
           P    PP  PP     P   PP  PPPP   K      P
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPP--PPPPGYVKKRKNKTP 41



 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = -1

Query: 461 PXKKXXPPXPGGRFXRXXKPPPPPXG 384
           P     PP P G       PPPPP G
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPPG 31



 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = -3

Query: 465 VPXKKXXPPPPXGXXFXXEXAPPPPP 388
           +P     PPPP          PPPPP
Sbjct: 4   LPPGNPPPPPPPPGFEPPSQPPPPPP 29


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 29.5 bits (63), Expect = 0.69
 Identities = 16/38 (42%), Positives = 16/38 (42%)
 Frame = -1

Query: 725 FGRXGGGGXXGGXPXGXXXXXGGAFGGXP*XGXFXXFS 612
           FG  GG G  GG   G     GGA  G P  G    FS
Sbjct: 456 FGGRGGFGGRGGFGGGRGRGRGGARSGNPNRGSVAPFS 493


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 16/56 (28%), Positives = 17/56 (30%)
 Frame = +1

Query: 556 PXKGGXPPXXPXXPXPPRGEXXXKXPX*GXPPKAPPXXXXXPXGXPPXXPPPPXRP 723
           P     PP     P  P        P    P K+PP     P   PP  P  P  P
Sbjct: 152 PSPASAPPIPSKAPPIPSSLPPPAQP--AAPVKSPPSAPSLPSAVPPMPPKVPPPP 205


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 16/53 (30%), Positives = 17/53 (32%)
 Frame = +1

Query: 586 PXXPXPPRGEXXXKXPX*GXPPKAPPXXXXXPXGXPPXXPPPPXRPKNXXXVP 744
           P  P PP        P    PP APP         PP  P  P  P     +P
Sbjct: 415 PPVPTPP--SLPPSAPP-SLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMP 464


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 13/46 (28%), Positives = 14/46 (30%)
 Frame = +1

Query: 577 PXXPXXPXPPRGEXXXKXPX*GXPPKAPPXXXXXPXGXPPXXPPPP 714
           P  P  P PP      + P    PP  P          P   P PP
Sbjct: 659 PEAPSVPQPPAAPVVPEVPSVPQPPAVPVVPEAGQLNEPVVPPLPP 704


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,581,515
Number of Sequences: 5004
Number of extensions: 21445
Number of successful extensions: 176
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)