Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_J07
         (889 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    23   2.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.7  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   8.6  

>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
 Frame = +1

Query: 379 RDS*RPADMELRRQLYRPDDK--H-ELRHAPEAPGHIQGPVPARKPRACHVRHIRLQHAT 549
           R++   A+    R +Y P  +  H  LR  PEA      PV   +PR  H R  R   A 
Sbjct: 90  REAESEAEPGNNRPVYIPQPRPPHPRLRREPEAEPGNNRPVYIPQPRPPHPRLRREPEAE 149

Query: 550 NKDKPPY*VPRSVRP 594
             +  P  +P+   P
Sbjct: 150 PGNNRPVYIPQPRPP 164


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -2

Query: 684  PVVGHPNGLRSESRSTYSCSMP-NHGSWS 601
            P VGHP    + SRS  S SMP  +G +S
Sbjct: 1761 PPVGHPTNASAHSRSG-SQSMPRQNGRYS 1788


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +1

Query: 247 PLEDTVGPVQRSTAAGRQGPRHIRMDRRLRRACSLQRQDFELHS 378
           P +  V  V+ ST++G     ++ +  RL    SLQ      HS
Sbjct: 245 PADSGVSDVESSTSSGGNEDANLLLKARLNPNSSLQPSLASHHS 288


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 246,171
Number of Sequences: 438
Number of extensions: 5681
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)