Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_J04
         (897 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.06 |pmt3|ubl2, smt3|SUMO|Schizosaccharomyces pombe|chr 2...    91   1e-19
SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce...    32   0.096
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    31   0.29 
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom...    28   2.1  
SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       27   4.8  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    27   4.8  
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    26   6.3  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    26   6.3  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    26   6.3  
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc...    26   8.4  
SPAC607.04 |||inositol polyphosphate kinase |Schizosaccharomyces...    26   8.4  

>SPBC365.06 |pmt3|ubl2, smt3|SUMO|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 117

 Score = 91.5 bits (217), Expect = 1e-19
 Identities = 45/82 (54%), Positives = 52/82 (63%)
 Frame = +3

Query: 183 KGENEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRFDGQPINEND 362
           K   EHINLKV+GQDN  V FKIKK T   KLM  YC R G SM  +RF  DG+ I  + 
Sbjct: 30  KPSTEHINLKVVGQDNNEVFFKIKKTTEFSKLMKIYCARQGKSMNSLRFLVDGERIRPDQ 89

Query: 363 TPTSLEMEEGDTIEVYQQQTGG 428
           TP  L+ME+GD IE   +Q GG
Sbjct: 90  TPAELDMEDGDQIEAVLEQLGG 111


>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 32.3 bits (70), Expect = 0.096
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +3

Query: 267 LRKLMNAYCDRAGLSM-QVVRFRFDGQPINENDTPTSLEMEEGDTIEV 407
           ++ L+  YC    +S  + +R  F+G+ ++ ND   S E+E+ D + V
Sbjct: 356 VKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSV 403


>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = -1

Query: 687 WKLLKLPTAFGILIIY-LTTSYLRRIMLCVARLCYYVSQNYFLTLLQIQMMFL 532
           W L+ L  A GI+II+ L   +LR+  +     C Y+++ +F  L    M ++
Sbjct: 332 WFLISLAIAGGIVIIFVLIIKFLRQTRIIAKSSCDYITRYWFRVLFNACMRWV 384


>SPBC18H10.09 |||zinc finger protein, zf-CHY
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
 Frame = -3

Query: 676 EVTYSIWYTYNLPYHKLFETHNALRSSAMLLCVTKLLPNTFTDTNDVSLKLT*G*SLRRV 497
           + T +  + Y L   K FET N      M+  V    P T TD   ++ KL  G    RV
Sbjct: 17  KTTLTSLFNYLLQNWKSFETCNTKERELMVQQVDSKKPETPTDLEPLANKLE-GPLSERV 75

Query: 496 HL---IDFDPLEMVN 461
           HL   +D++ L   N
Sbjct: 76  HLNTTLDYEVLRGQN 90


>SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 111

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 651 LIIYLTTSYLRRIMLCVARLCYYVSQNYFL 562
           L+I + T Y RRI+ C A LC  +   Y+L
Sbjct: 39  LLIVVITLY-RRIVECCASLCSLIFSKYYL 67


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 489  LILTHWRWSILKIIKFTLGTLLR 421
            L+  H RWS +++ K+ LGT  +
Sbjct: 1285 LLFCHGRWSYVRLSKYILGTFYK 1307


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 281 HQFPERCVFLYFELYNCI 228
           H+FP  C+F  F  YNCI
Sbjct: 533 HRFP--CIFTSFSCYNCI 548


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1516

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 248  FELYNCIILT*YFQINVFVFSLLFI 174
            +E+YN +I + Y  INV  F+ LFI
Sbjct: 1307 YEIYNALIRSIYRFINVEAFNSLFI 1331


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 281 HQFPERCVFLYFELYNCI 228
           H+FP  C+F  F  YNCI
Sbjct: 533 HRFP--CIFTSFSCYNCI 548


>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
           Uap56|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 8/84 (9%)
 Frame = +3

Query: 72  CHLRVRL*KQIPNQFVN-SQFCINS----F*NHINLKM---ADEKKGENEHINLKVLGQD 227
           CH R  L  QI N++   S++  +     F   IN+K    A + K ++ HI +   G+ 
Sbjct: 126 CHTR-ELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHIVVATPGRL 184

Query: 228 NAIVQFKIKKHTPLRKLMNAYCDR 299
           NA+V+ KI K   ++  +   CD+
Sbjct: 185 NALVREKILKVNSVKHFVLDECDK 208


>SPAC607.04 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 268

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/55 (21%), Positives = 27/55 (49%)
 Frame = -3

Query: 748 LLLQHYNSLAFVDVSTKHITMEIVEVTYSIWYTYNLPYHKLFETHNALRSSAMLL 584
           L +  Y+SL        ++ ++++++ +S W    + ++ L    N +   AMLL
Sbjct: 211 LFVYDYSSLNPTYHCESNVVLKLIDLAHSRWTKNTIDHNTLIGVKNLIHCFAMLL 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,426,150
Number of Sequences: 5004
Number of extensions: 68521
Number of successful extensions: 148
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)