Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_J04
         (897 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X99600-1|CAA67914.1|   91|Caenorhabditis elegans ubiquitin-like ...    95   8e-20
U94830-1|AAB67608.1|   91|Caenorhabditis elegans ubiquitin-like ...    95   8e-20
AF043701-6|AAK18969.1|   91|Caenorhabditis elegans Sumo (ubiquit...    95   8e-20
U09415-1|AAA82164.1|  655|Caenorhabditis elegans Ceprp21 protein.      34   0.16 
AF106576-5|AAC78179.1|  655|Caenorhabditis elegans Yeast prp (sp...    34   0.16 
AF040644-5|AAD34647.1| 1032|Caenorhabditis elegans Hypothetical ...    32   0.64 
AC024776-24|ABN43079.1|  408|Caenorhabditis elegans Hypothetical...    29   3.4  

>X99600-1|CAA67914.1|   91|Caenorhabditis elegans ubiquitin-like
           protein protein.
          Length = 91

 Score = 94.7 bits (225), Expect = 8e-20
 Identities = 45/90 (50%), Positives = 66/90 (73%), Gaps = 3/90 (3%)
 Frame = +3

Query: 168 MADE--KKGEN-EHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRFD 338
           MAD+  + G+N E+I +KV+GQD+  V F++K  T + KL  +Y DR G+++  +RF FD
Sbjct: 1   MADDAAQAGDNAEYIKIKVVGQDSNEVHFRVKYGTSMAKLKKSYADRTGVAVNSLRFLFD 60

Query: 339 GQPINENDTPTSLEMEEGDTIEVYQQQTGG 428
           G+ IN++DTP +LEME+ D IEVYQ+Q GG
Sbjct: 61  GRRINDDDTPKTLEMEDDDVIEVYQEQLGG 90


>U94830-1|AAB67608.1|   91|Caenorhabditis elegans ubiquitin-like
           protein protein.
          Length = 91

 Score = 94.7 bits (225), Expect = 8e-20
 Identities = 45/90 (50%), Positives = 66/90 (73%), Gaps = 3/90 (3%)
 Frame = +3

Query: 168 MADE--KKGEN-EHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRFD 338
           MAD+  + G+N E+I +KV+GQD+  V F++K  T + KL  +Y DR G+++  +RF FD
Sbjct: 1   MADDAAQAGDNAEYIKIKVVGQDSNEVHFRVKYGTSMAKLKKSYADRTGVAVNSLRFLFD 60

Query: 339 GQPINENDTPTSLEMEEGDTIEVYQQQTGG 428
           G+ IN++DTP +LEME+ D IEVYQ+Q GG
Sbjct: 61  GRRINDDDTPKTLEMEDDDVIEVYQEQLGG 90


>AF043701-6|AAK18969.1|   91|Caenorhabditis elegans Sumo
           (ubiquitin-related) homologprotein 1 protein.
          Length = 91

 Score = 94.7 bits (225), Expect = 8e-20
 Identities = 45/90 (50%), Positives = 66/90 (73%), Gaps = 3/90 (3%)
 Frame = +3

Query: 168 MADE--KKGEN-EHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRFD 338
           MAD+  + G+N E+I +KV+GQD+  V F++K  T + KL  +Y DR G+++  +RF FD
Sbjct: 1   MADDAAQAGDNAEYIKIKVVGQDSNEVHFRVKYGTSMAKLKKSYADRTGVAVNSLRFLFD 60

Query: 339 GQPINENDTPTSLEMEEGDTIEVYQQQTGG 428
           G+ IN++DTP +LEME+ D IEVYQ+Q GG
Sbjct: 61  GRRINDDDTPKTLEMEDDDVIEVYQEQLGG 90


>U09415-1|AAA82164.1|  655|Caenorhabditis elegans Ceprp21 protein.
          Length = 655

 Score = 33.9 bits (74), Expect = 0.16
 Identities = 18/70 (25%), Positives = 33/70 (47%)
 Frame = +3

Query: 219 GQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRFDGQPINENDTPTSLEMEEGDT 398
           G D +IVQF I+   P+ +L     DR G+ +   +   DG  + +N +     + +   
Sbjct: 583 GMDGSIVQFTIQVTAPMSELKQQIQDRYGMPVGKQKLMSDGLFVKDNMSSAFYNLADRTA 642

Query: 399 IEVYQQQTGG 428
           I +  ++ GG
Sbjct: 643 IYLQVKERGG 652


>AF106576-5|AAC78179.1|  655|Caenorhabditis elegans Yeast prp
           (splicing factor) relatedprotein 21 protein.
          Length = 655

 Score = 33.9 bits (74), Expect = 0.16
 Identities = 18/70 (25%), Positives = 33/70 (47%)
 Frame = +3

Query: 219 GQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRFDGQPINENDTPTSLEMEEGDT 398
           G D +IVQF I+   P+ +L     DR G+ +   +   DG  + +N +     + +   
Sbjct: 583 GMDGSIVQFTIQVTAPMSELKQQIQDRYGMPVGKQKLMSDGLFVKDNMSSAFYNLADRTA 642

Query: 399 IEVYQQQTGG 428
           I +  ++ GG
Sbjct: 643 IYLQVKERGG 652


>AF040644-5|AAD34647.1| 1032|Caenorhabditis elegans Hypothetical
            protein H04J21.1 protein.
          Length = 1032

 Score = 31.9 bits (69), Expect = 0.64
 Identities = 14/69 (20%), Positives = 35/69 (50%)
 Frame = +3

Query: 222  QDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRFDGQPINENDTPTSLEMEEGDTI 401
            Q   ++   ++++  L +L     ++ G+  + +R  ++G+PI+  DTP SL +      
Sbjct: 930  QQLEVLHSHVEENEKLGRLDKRISEKIGVDAKFIRVTYNGRPIDPMDTPYSLGLSHTANF 989

Query: 402  EVYQQQTGG 428
             ++ + + G
Sbjct: 990  HMFFKPSPG 998


>AC024776-24|ABN43079.1|  408|Caenorhabditis elegans Hypothetical
           protein Y41D4B.24 protein.
          Length = 408

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 17/62 (27%), Positives = 37/62 (59%), Gaps = 5/62 (8%)
 Frame = -3

Query: 754 FALLLQHYN---SLAFVDVSTKHITMEIV--EVTYSIWYTYNLPYHKLFETHNALRSSAM 590
           F +LL  ++   S+A++ + + ++  +++   +  +IWYTY +P   L  +H A+ SS+ 
Sbjct: 74  FMMLLAFFDIFVSMAYIMLMSVNVLSDVLMSPILVNIWYTYMIPI--LTVSHIAMTSSSF 131

Query: 589 LL 584
           L+
Sbjct: 132 LI 133


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,974,016
Number of Sequences: 27780
Number of extensions: 387617
Number of successful extensions: 916
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)