Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_J03
(906 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81035-5|CAB02738.1| 246|Caenorhabditis elegans Hypothetical pr... 140 2e-33
AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome al... 77 2e-14
Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical pr... 65 6e-11
Z74030-2|CAA98441.1| 231|Caenorhabditis elegans Hypothetical pr... 65 6e-11
Z79754-8|CAB02097.1| 248|Caenorhabditis elegans Hypothetical pr... 63 3e-10
AF036694-1|AAB88344.1| 260|Caenorhabditis elegans Proteasome al... 46 3e-05
Z48544-9|CAA88436.2| 250|Caenorhabditis elegans Hypothetical pr... 37 0.023
>Z81035-5|CAB02738.1| 246|Caenorhabditis elegans Hypothetical
protein C15H11.7 protein.
Length = 246
Score = 140 bits (338), Expect = 2e-33
Identities = 66/164 (40%), Positives = 108/164 (65%)
Frame = +1
Query: 238 LTSVALRGTDAAVVAAQRKVPDRLLDPVSVTHLFALTDRIGCVMTGMIADSRSQVQRARY 417
LT+VA++G DAAV+A Q++VPD L+ +VT ++ ++ +GC GMI D++ Q++RA+
Sbjct: 37 LTAVAVKGADAAVIAVQKRVPDSLIVADTVTSVYQISQSVGCCAIGMIPDAKFQIKRAQG 96
Query: 418 EAANWQYKYGSEIPVHILCRRIADISQVYTQNAEMRPLGCSMMLIAYDDEAGALCVQNRP 597
EAA+W+YK G ++P +L +++AD++Q YTQNAEMR LGC+++ I+YDDE G + P
Sbjct: 97 EAASWKYKNGYDMPCELLAKKMADLNQYYTQNAEMRSLGCALLFISYDDEKGPEVYRVDP 156
Query: 598 XXXXXXXXXXXXXXXXXXMETLISKRN*KKRSDLSTDDAIQLAI 729
+ + K+ KK+S+L++ +AI+LAI
Sbjct: 157 AGYYRGMKGVSVGVKQLPATSFLEKKI-KKKSELTSTEAIELAI 199
Score = 64.5 bits (150), Expect = 1e-10
Identities = 29/33 (87%), Positives = 31/33 (93%)
Frame = +3
Query: 129 MARESSAGFDRHITIFSPEGRLYQVEYALKAIN 227
M+R SSAGFDRHITIFSPEGR+YQVEYA KAIN
Sbjct: 1 MSRGSSAGFDRHITIFSPEGRVYQVEYAFKAIN 33
>AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome alpha
subunit protein 3 protein.
Length = 250
Score = 76.6 bits (180), Expect = 2e-14
Identities = 40/120 (33%), Positives = 66/120 (55%), Gaps = 1/120 (0%)
Frame = +1
Query: 241 TSVALRGTDAAVVAAQRKVPDRLLDPVSVTH-LFALTDRIGCVMTGMIADSRSQVQRARY 417
T + + ++ VVAA+RK +LLD +T ++ L+D I C + G+ AD+ + R+
Sbjct: 33 TCLGILSSEGIVVAAERKNVHKLLDDSVMTEKVYRLSDNISCTVAGITADANILINHLRW 92
Query: 418 EAANWQYKYGSEIPVHILCRRIADISQVYTQNAEMRPLGCSMMLIAYDDEAGALCVQNRP 597
AA+++ YG E+PV L + + + Q YTQ RP G S++ I +D G Q+ P
Sbjct: 93 WAASYRNSYGEEMPVEQLVQNLCNEKQRYTQIGGKRPFGVSLLYIGWDKHYGYQLYQSDP 152
Score = 43.2 bits (97), Expect = 3e-04
Identities = 18/25 (72%), Positives = 22/25 (88%)
Frame = +3
Query: 153 FDRHITIFSPEGRLYQVEYALKAIN 227
+D TIFSPEGRLYQVEYA++AI+
Sbjct: 5 YDSRTTIFSPEGRLYQVEYAMEAIS 29
>Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical
protein C36B1.4 protein.
Length = 253
Score = 65.3 bits (152), Expect = 6e-11
Identities = 34/121 (28%), Positives = 59/121 (48%)
Frame = +1
Query: 235 GLTSVALRGTDAAVVAAQRKVPDRLLDPVSVTHLFALTDRIGCVMTGMIADSRSQVQRAR 414
G T+V +RG D V+ ++K L D ++ + + D + G+ AD+R V RAR
Sbjct: 30 GSTAVGVRGKDCIVIGVEKKSIPALQDDRTIRKIHMIDDHVMLAFAGLSADARVLVDRAR 89
Query: 415 YEAANWQYKYGSEIPVHILCRRIADISQVYTQNAEMRPLGCSMMLIAYDDEAGALCVQNR 594
E +++ + V + R IA+ Q +TQ+ RP G SM++ +D + +
Sbjct: 90 IECQSYKLTLEDPVTVAYISRYIANTKQRFTQSPGRRPFGISMLIGGFDHDGTPRLFKTE 149
Query: 595 P 597
P
Sbjct: 150 P 150
Score = 42.3 bits (95), Expect = 5e-04
Identities = 17/27 (62%), Positives = 23/27 (85%)
Frame = +3
Query: 153 FDRHITIFSPEGRLYQVEYALKAINQG 233
+DR ITIFSP+G L+QVEYA +A+ +G
Sbjct: 4 YDRAITIFSPDGHLFQVEYAQEAVKKG 30
>Z74030-2|CAA98441.1| 231|Caenorhabditis elegans Hypothetical
protein D1054.2 protein.
Length = 231
Score = 65.3 bits (152), Expect = 6e-11
Identities = 40/113 (35%), Positives = 57/113 (50%)
Frame = +1
Query: 235 GLTSVALRGTDAAVVAAQRKVPDRLLDPVSVTHLFALTDRIGCVMTGMIADSRSQVQRAR 414
G SV LR D V+A + V L D ++ IGCV +GM D R V++AR
Sbjct: 31 GQPSVGLRAKDGVVLATEN-VGSVLTDDQPKVE--QISKHIGCVYSGMGPDFRILVKKAR 87
Query: 415 YEAANWQYKYGSEIPVHILCRRIADISQVYTQNAEMRPLGCSMMLIAYDDEAG 573
A ++ YG E+P L IA + Q YTQ+ +RP G S+++ +D G
Sbjct: 88 KIAMEYEMMYGEEMPTIQLVTDIAAVMQEYTQSGGVRPFGASLLIAGWDKNPG 140
Score = 34.3 bits (75), Expect = 0.12
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +3
Query: 165 ITIFSPEGRLYQVEYALKAINQG 233
+T FSP G+L Q+EYAL A+ G
Sbjct: 9 LTTFSPSGKLMQIEYALNAVKNG 31
>Z79754-8|CAB02097.1| 248|Caenorhabditis elegans Hypothetical
protein F25H2.9 protein.
Length = 248
Score = 62.9 bits (146), Expect = 3e-10
Identities = 33/121 (27%), Positives = 68/121 (56%), Gaps = 4/121 (3%)
Frame = +1
Query: 229 RVGLTSVALRGTDAAVVAAQRKVPDRLLDPVSVTHLFALTDRIGCVMTGMIADSRSQVQR 408
++G TS+ ++ ++ ++AA+++ +L+ ++ + + IG G+IADSR+ V+R
Sbjct: 32 KLGSTSIGIKTSEGVLLAAEKRSTSKLMVNDAIEKISKVDQHIGVTFAGLIADSRTLVER 91
Query: 409 ARYEAANWQYKYGSEIPVHILCRRIADISQVYTQN---AEM-RPLGCSMMLIAYDDEAGA 576
A+ EA N+ + Y +I V + + +A+++ + + A M RP G +M+ D E
Sbjct: 92 AQIEAQNFWFTYNRKIRVEDVTQSVANLALQFGDDDVKASMSRPFGVAMLFAGVDQEGAK 151
Query: 577 L 579
L
Sbjct: 152 L 152
Score = 41.9 bits (94), Expect = 6e-04
Identities = 17/31 (54%), Positives = 23/31 (74%)
Frame = +3
Query: 153 FDRHITIFSPEGRLYQVEYALKAINQGWVDI 245
+DR + FSPEGRL+QVEYA++A+ G I
Sbjct: 8 YDRGVNTFSPEGRLFQVEYAIEAVKLGSTSI 38
>AF036694-1|AAB88344.1| 260|Caenorhabditis elegans Proteasome alpha
subunit protein 6 protein.
Length = 260
Score = 46.4 bits (105), Expect = 3e-05
Identities = 27/121 (22%), Positives = 55/121 (45%)
Frame = +1
Query: 235 GLTSVALRGTDAAVVAAQRKVPDRLLDPVSVTHLFALTDRIGCVMTGMIADSRSQVQRAR 414
G +V ++ AV+ A ++ + L ++ + G + G+++D R + +
Sbjct: 32 GSATVGIKSETHAVIVALKRAQNDLSSHQK--KVYEIDTHAGVSIAGLLSDGRILARYLQ 89
Query: 415 YEAANWQYKYGSEIPVHILCRRIADISQVYTQNAEMRPLGCSMMLIAYDDEAGALCVQNR 594
E ++W++ Y +P+ L + Q TQ RP G +++ YD + GA +Q
Sbjct: 90 TECSSWRWDYKQAVPIKKLAESMQLKLQANTQYYGRRPFGVGILIAGYDKD-GAHIIQTD 148
Query: 595 P 597
P
Sbjct: 149 P 149
Score = 40.7 bits (91), Expect = 0.001
Identities = 15/27 (55%), Positives = 24/27 (88%)
Frame = +3
Query: 153 FDRHITIFSPEGRLYQVEYALKAINQG 233
+D +T++SP+GRL+QVEYA++A+ QG
Sbjct: 6 YDGDVTVWSPQGRLHQVEYAVEAMKQG 32
>Z48544-9|CAA88436.2| 250|Caenorhabditis elegans Hypothetical
protein ZK945.2 protein.
Length = 250
Score = 36.7 bits (81), Expect = 0.023
Identities = 14/26 (53%), Positives = 21/26 (80%)
Frame = +3
Query: 150 GFDRHITIFSPEGRLYQVEYALKAIN 227
G+D + FSP+GR++QVEYA KA++
Sbjct: 7 GYDLAASTFSPDGRIFQVEYAQKAVD 32
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,954,575
Number of Sequences: 27780
Number of extensions: 343634
Number of successful extensions: 757
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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