Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_J02
(926 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC644.08 |||haloacid dehalogenase-like hydrolase|Schizosacchar... 90 5e-19
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 30 0.40
SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|c... 28 1.6
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 28 1.6
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 28 2.1
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 27 2.8
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma... 27 3.8
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch... 27 3.8
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce... 26 6.6
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar... 26 6.6
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 26 6.6
>SPAC644.08 |||haloacid dehalogenase-like
hydrolase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 89.8 bits (213), Expect = 5e-19
Identities = 64/168 (38%), Positives = 91/168 (54%), Gaps = 1/168 (0%)
Frame = +3
Query: 189 KVLLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWDEEDVKEAVNALRKLAIEDQEKS 368
K LLLDIEGT SISFVKDKLFPYA + +++ ++ ++ LR+L K+
Sbjct: 3 KNLLLDIEGTVGSISFVKDKLFPYAASRYESYVNENYESDE------NLRELG-----KT 51
Query: 369 VEGLVTIPGEDASKEDQIEGLVKNVKWQMSSDRKVAPLKXLQGLIWKKGYDXGDIXGPVY 548
E E L+ N++ + K K +QG IWKKGY+ ++ ++
Sbjct: 52 PE----------------EALI-NLRKLHAEGSKERSFKMVQGRIWKKGYESNELTSHLF 94
Query: 549 DDVLPALEQWRSVQ-GQKIYIYSSGSVQAXXTLFGQSSAGDLLPLIDG 689
DV+PA++ RS+Q G ++YIYSSGSV A F S AG+LL G
Sbjct: 95 PDVVPAIQ--RSLQLGMRVYIYSSGSVPAQKLYFEHSDAGNLLKYFSG 140
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 30.3 bits (65), Expect = 0.40
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +3
Query: 255 PYAEENVKDFLDAQWDEEDVKEAVNALRKLAIEDQEKSV 371
PY+ E VK+ L + EEDV +AL L+ QE S+
Sbjct: 355 PYSHEEVKEILKIRCQEEDVDMEPSALDYLSTIGQETSL 393
>SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 28.3 bits (60), Expect = 1.6
Identities = 14/63 (22%), Positives = 27/63 (42%)
Frame = +3
Query: 183 KSKVLLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWDEEDVKEAVNALRKLAIEDQE 362
+ ++ L +E T TSI + +FPY + F W +D + L L + ++
Sbjct: 182 QDRISALILENTFTSIKDMIPTVFPYGGSIISRFCTEIWSSQDEIRKIKKLPVLFLSGEK 241
Query: 363 KSV 371
+
Sbjct: 242 DEI 244
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 28.3 bits (60), Expect = 1.6
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -2
Query: 589 CTERHCSRAGSTSSYTG 539
C+E+H S A TSSYTG
Sbjct: 145 CSEKHISSAHETSSYTG 161
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 27.9 bits (59), Expect = 2.1
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 267 ENVKDFLDAQWDE-EDVKEAVNALRKLAIEDQEKSVEGLVTIPGEDASKED 416
EN L Q+D+ E + V+ K A+ D + V + I GEDASKE+
Sbjct: 571 ENYAYSLKGQFDDDEQLGGKVDPEDKQAVLDAVEDVAEWLEIHGEDASKEE 621
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 27.5 bits (58), Expect = 2.8
Identities = 22/58 (37%), Positives = 30/58 (51%)
Frame = +3
Query: 330 ALRKLAIEDQEKSVEGLVTIPGEDASKEDQIEGLVKNVKWQMSSDRKVAPLKXLQGLI 503
AL KL + +VT G A KED+ + ++ MS+ RKVA LK L+G I
Sbjct: 329 ALVKLTDGTNGADLRNVVTEAGFIAIKEDRDYVIQSDL---MSAARKVADLKKLEGTI 383
>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 535
Score = 27.1 bits (57), Expect = 3.8
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 402 HPLQEW*PVLQHSSPD 355
HP +EW LQH+SPD
Sbjct: 270 HPFKEWLLNLQHTSPD 285
>SPAC7D4.11c |sec39||secretory pathway protein Sec39
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 769
Score = 27.1 bits (57), Expect = 3.8
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = -2
Query: 244 SLTKLIDVVVPSISRSKTLLFLTISPITVFSFAISTDPHQLCRNYFYVFQNL 89
++ +I + P + SK +F+ ITVF S DP+ + N+ +V++ L
Sbjct: 182 TIRDVISLAFPVLD-SKNCVFIMDEIITVFINNSSNDPNLISENWDFVWKKL 232
>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1112
Score = 26.2 bits (55), Expect = 6.6
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Frame = +3
Query: 342 LAIEDQEKSVEGLVTIPGE--DASKEDQIEGLVKNVKWQMSSDRKVAPLKXLQGLIWKKG 515
L ++D EK ++ P E + KE +G V N +SSD+ ++ + L +
Sbjct: 581 LPVKDDEKDLDLRELNPLEPFENMKEQADDGTVTN-PLNVSSDKAMS----VYLLSSENA 635
Query: 516 YDXGDIXGPVYDDVLPALE 572
D GDI D VLP LE
Sbjct: 636 KDTGDIKSESIDAVLPTLE 654
>SPAC11E3.11c |||guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 26.2 bits (55), Expect = 6.6
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +2
Query: 563 GS*TMAFSTGSEDLHLLLWIRPSPXXSFWPVICWGPTSSHRWAISTL-L*VLNRKLPVTL 739
G +M+ T S L +RPS SF+ I GP+ S +S+L + N + T
Sbjct: 136 GMTSMSSITSSTPTPSQLPVRPSTSLSFFDDIPLGPSFSAETILSSLSISTSNNAMSKTT 195
Query: 740 PCP 748
P P
Sbjct: 196 PAP 198
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 26.2 bits (55), Expect = 6.6
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +3
Query: 264 EENVKDFLDAQWDEEDVKEAVNALRKLAIEDQEKS 368
EEN + L A DEEDV+ A A ++ A+E E S
Sbjct: 1180 EENWEVALAAAEDEEDVQAAQVARKESALEQTEFS 1214
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,342,467
Number of Sequences: 5004
Number of extensions: 66887
Number of successful extensions: 203
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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