Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_J02
(926 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0330 - 16446685-16446776,16446968-16447119,16447172-164472... 155 6e-38
01_01_0009 + 57658-60086,60855-60935,61094-61295,61385-61905,619... 133 2e-31
06_01_0608 - 4399252-4399894,4401640-4402427 33 0.43
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 32 0.56
03_06_0495 + 34323082-34323173,34323600-34323742,34324265-343243... 30 2.3
07_03_0629 - 20076676-20080390,20080508-20080576,20081335-20081660 29 5.2
03_06_0344 - 33276366-33276548,33277044-33277169,33277254-332773... 29 6.9
12_01_0468 + 3661177-3661626 28 9.2
03_02_0735 + 10811326-10812342,10813199-10813555,10813962-108142... 28 9.2
>11_04_0330 -
16446685-16446776,16446968-16447119,16447172-16447281,
16447518-16447619,16447705-16447854,16448195-16448350,
16448552-16448713,16449549-16449638,16450152-16450271,
16451323-16451418,16451502-16451638,16453400-16453622
Length = 529
Score = 155 bits (375), Expect = 6e-38
Identities = 79/173 (45%), Positives = 110/173 (63%), Gaps = 1/173 (0%)
Frame = +3
Query: 180 KKSK-VLLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWDEEDVKEAVNALRKLAIED 356
K SK ++LDIEGTTT ISFV D +FPYA +NV+ L + + ++ KE + LR ED
Sbjct: 273 KSSKHCVVLDIEGTTTPISFVTDVMFPYARDNVRKHLTSTYSSDETKEDIKLLRIQVEED 332
Query: 357 QEKSVEGLVTIPGEDASKEDQIEGLVKNVKWQMSSDRKVAPLKXLQGLIWKKGYDXGDIX 536
+ + G V IP +DA KE+ I LV NV+ + +DRK+ LK LQG IW+ G++ ++
Sbjct: 333 LKNGIVGSVPIPPDDADKEEVINALVANVESMIKADRKITSLKQLQGHIWRTGFESKELQ 392
Query: 537 GPVYDDVLPALEQWRSVQGQKIYIYSSGSVQAXXTLFGQSSAGDLLPLIDGPF 695
G V+DDV AL+ W + G K+YIYSSGS +A LFG ++ GDL + G F
Sbjct: 393 GVVFDDVPEALKHWHA-SGMKVYIYSSGSREAQRLLFGNTAYGDLRQYLCGFF 444
>01_01_0009 + 57658-60086,60855-60935,61094-61295,61385-61905,
61996-62114,62248-62345
Length = 1149
Score = 133 bits (322), Expect = 2e-31
Identities = 81/189 (42%), Positives = 112/189 (59%), Gaps = 5/189 (2%)
Frame = +3
Query: 144 MAKENTVIGDIVKKSKVLLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQW-DEEDVKE 320
MA ++ + D+ +V+L DIEGTTT ISFV D LFPYA +NV+ L A + E+ +
Sbjct: 891 MAMASSELPDLSAIQRVVL-DIEGTTTPISFVADVLFPYARDNVRRHLAATYGSSEETRA 949
Query: 321 AVNALRKLAIEDQEKSVEGLVTIPGEDASKEDQ---IEGLVKNVKWQMSSDRKVAPLKXL 491
V LR ED + V+G V +P DA E + +E L NV+ + +DRKV LK L
Sbjct: 950 DVALLRAQVEEDLAQGVDGAVAVP-PDAEGEGEGAVVEALAANVESMIRADRKVTALKQL 1008
Query: 492 QGLIWKKGYDXGDIXGPVYDDVLPALEQWRSVQGQKIYIYSSGSVQAXXTLFGQSSA-GD 668
QG IW++G+D G++ VYDD AL +WR+ K YIYSSGS +A +F ++A GD
Sbjct: 1009 QGRIWRRGFDSGELRSEVYDDAADALRRWRA----KAYIYSSGSREAQRLIFANTAAHGD 1064
Query: 669 LLPLIDGPF 695
L + G F
Sbjct: 1065 LRDHLCGFF 1073
>06_01_0608 - 4399252-4399894,4401640-4402427
Length = 476
Score = 32.7 bits (71), Expect = 0.43
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Frame = +3
Query: 255 PYAEENVKDFLDAQWDEEDVKEAVNA---LRKLAIEDQEKSVEGLVT 386
PY E++++ LD + DEEDV+ + +A L K+ +E + L+T
Sbjct: 371 PYTEDDIRKILDIRCDEEDVEMSADAKVLLTKIGVETSLRYAIHLIT 417
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 32.3 bits (70), Expect = 0.56
Identities = 17/51 (33%), Positives = 19/51 (37%)
Frame = +3
Query: 765 PEEIWFSPTLNXTXNPXPLXXXPPPXXPPREXPLGXXTRXXSPXXXFPPXP 917
PE SP+ +P P PPP PP P G P PP P
Sbjct: 522 PEVQHESPSDRKLPSPSPTAAAPPPPPPPPPPPSGNKPAFSPPPPPPPPPP 572
>03_06_0495 +
34323082-34323173,34323600-34323742,34324265-34324315,
34324405-34324626,34324731-34324833,34325156-34325552,
34326564-34326735,34326995-34327089,34327246-34327455
Length = 494
Score = 30.3 bits (65), Expect = 2.3
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 5/99 (5%)
Frame = +3
Query: 132 GSVEMAKENT-----VIGDIVKKSKVLLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQ 296
G +E+A++NT V+ D K VL IEG +T + D L + EE + +D+
Sbjct: 251 GLLELARDNTSGAGNVLPDQDKLKDVLKSRIEGISTMDA---DDLSAHREE--RQLVDSL 305
Query: 297 WDEEDVKEAVNALRKLAIEDQEKSVEGLVTIPGEDASKE 413
W KE N L +EK GLV +PGEDA ++
Sbjct: 306 W-----KECYNEPSSL----REK---GLVVLPGEDAPQQ 332
>07_03_0629 - 20076676-20080390,20080508-20080576,20081335-20081660
Length = 1369
Score = 29.1 bits (62), Expect = 5.2
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Frame = +3
Query: 165 IGDIVKKSKVLLLDIEGTT---TSISFVKDKLFPYAEE-NVKDFLD-AQWDEEDVKEAVN 329
+G++ + K+ L + T + D +FPY EE + + QW E + K +
Sbjct: 1034 LGELPRLKKLSLFGLSSITHINDQVYGTNDVIFPYLEELHFSELFSWEQWSEAEYKLLIP 1093
Query: 330 ALRKLAI 350
LRKL I
Sbjct: 1094 HLRKLGI 1100
>03_06_0344 -
33276366-33276548,33277044-33277169,33277254-33277322,
33277401-33277505,33277595-33277633,33277717-33278016,
33278093-33278182,33278271-33278312,33278433-33278516,
33278762-33278947,33279218-33279403,33279663-33280025
Length = 590
Score = 28.7 bits (61), Expect = 6.9
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Frame = +3
Query: 168 GDIVKKSKVLLLDIEGTTTSISFVKD--KLFPYAEENVKDFLDAQWDEEDVKEAVNALRK 341
G I ++ K L++D +F +D ++F N + L + E VKE K
Sbjct: 238 GFIYRRLKCLIIDEADRLLEQNFEEDMKQIFKRLPLNRQTVLFSATQTEQVKE----FAK 293
Query: 342 LAIEDQEKSVEGLVTIPGEDASKEDQIEGL 431
L+ E E+S V + +DA +EGL
Sbjct: 294 LSFEKNEESTSKPVYVGVDDAETNATVEGL 323
>12_01_0468 + 3661177-3661626
Length = 149
Score = 28.3 bits (60), Expect = 9.2
Identities = 16/61 (26%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Frame = +3
Query: 264 EENVKDFLDAQWDEEDVKEAVNALRKLAIEDQEKSVEGLVTIPGEDASKEDQ-IEGLVKN 440
EE V++ D + +EE V+E + + ++++E+ + V GE+ ++E Q +G+V++
Sbjct: 71 EEEVEEEEDIE-EEEVVEEEEEEIEEEEVKEEEEELREQVQEAGEEVNEEQQGADGVVQS 129
Query: 441 V 443
+
Sbjct: 130 M 130
>03_02_0735 +
10811326-10812342,10813199-10813555,10813962-10814225,
10814894-10815010,10815796-10815944,10816315-10816606,
10816681-10816845,10817106-10817357
Length = 870
Score = 28.3 bits (60), Expect = 9.2
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +3
Query: 366 SVEGLVTIPGEDASKE--DQIEGLVKNVKWQMSSDRKVAPLKXLQGLIWKKG 515
+ +GL+T +D E DQIE L+++ K++ +DR+ + LI K G
Sbjct: 456 AAQGLITAGDKDIILEGLDQIEKLIQDGKFEWRTDREDVHMNIEAALIEKVG 507
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,865,192
Number of Sequences: 37544
Number of extensions: 490717
Number of successful extensions: 1457
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1409
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2647531240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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