Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_J02
(926 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75954-7|CAB00106.2| 492|Caenorhabditis elegans Hypothetical pr... 138 5e-33
Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical pr... 31 0.88
AL132860-3|CAB60514.2| 342|Caenorhabditis elegans Hypothetical ... 30 2.7
AF039046-1|AAB94210.1| 458|Caenorhabditis elegans F-box a prote... 29 3.6
U41545-4|AAK39134.1| 665|Caenorhabditis elegans Temporarily ass... 29 4.7
AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric c... 29 4.7
Z75535-3|CAH04733.1| 495|Caenorhabditis elegans Hypothetical pr... 28 8.2
Z75535-2|CAA99826.1| 500|Caenorhabditis elegans Hypothetical pr... 28 8.2
U64852-2|ABH03524.1| 975|Caenorhabditis elegans Uncoordinated p... 28 8.2
U64852-1|AAB04966.2| 1041|Caenorhabditis elegans Uncoordinated p... 28 8.2
AF338767-1|AAL15621.1| 1041|Caenorhabditis elegans UNC-83 protein. 28 8.2
>Z75954-7|CAB00106.2| 492|Caenorhabditis elegans Hypothetical
protein F58H1.3a protein.
Length = 492
Score = 138 bits (334), Expect = 5e-33
Identities = 79/169 (46%), Positives = 106/169 (62%), Gaps = 2/169 (1%)
Frame = +3
Query: 195 LLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWDEEDVKEAVNALRKLAIEDQEKSVE 374
LLLDIEGT TSISFVKD+LFPYA ENV ++L+ +D + V LR +A + E V
Sbjct: 11 LLLDIEGTITSISFVKDELFPYAFENVGNYLEEHYDNPATQIIVEDLRHIADQQAENDV- 69
Query: 375 GLVTIPGEDASKEDQIEGLVKNVKWQMSSDRKVAPLKXLQGLIWKKGYDXGDIXGPVYDD 554
+V I +++ IE + KNV+ + D+K+ P+K LQGLIW++ Y GD+ G VY D
Sbjct: 70 AVVRI---REPRKECIEDVTKNVRHWIKRDKKLTPMKALQGLIWEEAYQRGDVKGHVYPD 126
Query: 555 VLPALEQWRSVQGQK--IYIYSSGSVQAXXTLFGQSSAGDLLPLIDGPF 695
VLP L + V+ +K IYIYSSGSV A LF S GD+ ++ G F
Sbjct: 127 VLPVL---KIVENRKIPIYIYSSGSVHAQKLLFANSIEGDMTKILYGYF 172
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 640 LFLASHLLGTYFLSSMGHFDTAVGAKQEAXSYTALSXK 753
L A+ + G G+FDT +G K E+ SYT +S +
Sbjct: 154 LLFANSIEGDMTKILYGYFDTNIGLKGESNSYTKISER 191
>Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical
protein C46F11.4 protein.
Length = 811
Score = 31.5 bits (68), Expect = 0.88
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +3
Query: 354 DQEKSVEGLVTIPGEDASKEDQIEGLVKNVKWQMSSDRKVAPLK 485
D EK + +D +ED+++ + ++ Q SSD+KV+ K
Sbjct: 100 DDEKPASSSSKLAADDDDEEDELDAFMAGIEKQASSDKKVSEQK 143
>AL132860-3|CAB60514.2| 342|Caenorhabditis elegans Hypothetical
protein Y56A3A.4 protein.
Length = 342
Score = 29.9 bits (64), Expect = 2.7
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Frame = +3
Query: 168 GDIVKKSKV--LLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWDEEDVKEAVNALRK 341
G I++KSK+ L+ I TT VKD L YA++ V +D +E V +
Sbjct: 226 GSIMEKSKLDDLMQQISSTTVLEENVKDVLVEYADDFVSSLIDKACKMIKNRE-VKKIES 284
Query: 342 LAIEDQEKSVEGLVTIP 392
IE K+V + +P
Sbjct: 285 RDIEFILKNVYNMPVVP 301
>AF039046-1|AAB94210.1| 458|Caenorhabditis elegans F-box a protein
protein 195 protein.
Length = 458
Score = 29.5 bits (63), Expect = 3.6
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Frame = +3
Query: 267 ENVKDFLDAQWDEEDVKEAVNALRKLAIEDQEK----SVEGLVTIP 392
+NVK LD W EE++ AV A + ED+E+ EG+ +P
Sbjct: 377 KNVKVHLDDDWHEEELVGAVGAEEEEDEEDEEEEDEDEEEGMADVP 422
>U41545-4|AAK39134.1| 665|Caenorhabditis elegans Temporarily
assigned gene nameprotein 52 protein.
Length = 665
Score = 29.1 bits (62), Expect = 4.7
Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 2/95 (2%)
Frame = +3
Query: 180 KKSKVLLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWDEEDVKEAVNALRKLAIEDQ 359
K ++ D+ G + + + K P EE+ DFL QW + + +ED+
Sbjct: 386 KLRNMITADMTGNISRV-LTRKKPAPKLEES--DFLRGQWTTSTIASNQRKRKVATLEDE 442
Query: 360 EKSVEGLVTIPGEDASKEDQI--EGLVKNVKWQMS 458
E+ V +++ P K E V W S
Sbjct: 443 EEDVFNMLSSPNLSQRKRKATLQENTPSGVGWTAS 477
>AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 1 protein.
Length = 1475
Score = 29.1 bits (62), Expect = 4.7
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Frame = +3
Query: 258 YAEENVKDFLDAQWDEEDVKEAVNALRKLAIEDQEKSVEGLVTIPGEDASKE-DQIEGLV 434
++EE + ++Q E +K +RK+ IED EK ++ + + A+ E + +
Sbjct: 382 FSEEMERIRTESQTTSESLKYEHELVRKMMIEDMEKLEAEVLALKSQQANLEIQEFHDKI 441
Query: 435 KNVKW--QMSSDRK 470
K ++ Q+SS+ K
Sbjct: 442 KQLELEVQLSSENK 455
>Z75535-3|CAH04733.1| 495|Caenorhabditis elegans Hypothetical
protein F14B4.2b protein.
Length = 495
Score = 28.3 bits (60), Expect = 8.2
Identities = 15/60 (25%), Positives = 28/60 (46%)
Frame = +3
Query: 201 LDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWDEEDVKEAVNALRKLAIEDQEKSVEGL 380
+D G T + + + ++ DFL +WDE +E++N + L EK + G+
Sbjct: 261 VDEHGVTPEEMIINTEWGAFGDDGALDFLRTEWDEVVDRESINPGQHL----YEKMISGM 316
>Z75535-2|CAA99826.1| 500|Caenorhabditis elegans Hypothetical
protein F14B4.2a protein.
Length = 500
Score = 28.3 bits (60), Expect = 8.2
Identities = 15/60 (25%), Positives = 28/60 (46%)
Frame = +3
Query: 201 LDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWDEEDVKEAVNALRKLAIEDQEKSVEGL 380
+D G T + + + ++ DFL +WDE +E++N + L EK + G+
Sbjct: 266 VDEHGVTPEEMIINTEWGAFGDDGALDFLRTEWDEVVDRESINPGQHL----YEKMISGM 321
>U64852-2|ABH03524.1| 975|Caenorhabditis elegans Uncoordinated
protein 83, isoform b protein.
Length = 975
Score = 28.3 bits (60), Expect = 8.2
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +3
Query: 264 EENVKDFLDAQWDEEDVKEAVNALRKLAIEDQEKSVEGLVTIPGEDASKEDQIEGLVKNV 443
EE+ D D E V + + A + E ++G VT+ +S EDQ+ N
Sbjct: 201 EESEADEEDRHSQTETVVTEDDNVLPFAENEYESIMDGRVTVDSCTSSSEDQMVEQSTNK 260
Query: 444 KWQ 452
KW+
Sbjct: 261 KWE 263
>U64852-1|AAB04966.2| 1041|Caenorhabditis elegans Uncoordinated
protein 83, isoform a protein.
Length = 1041
Score = 28.3 bits (60), Expect = 8.2
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +3
Query: 264 EENVKDFLDAQWDEEDVKEAVNALRKLAIEDQEKSVEGLVTIPGEDASKEDQIEGLVKNV 443
EE+ D D E V + + A + E ++G VT+ +S EDQ+ N
Sbjct: 267 EESEADEEDRHSQTETVVTEDDNVLPFAENEYESIMDGRVTVDSCTSSSEDQMVEQSTNK 326
Query: 444 KWQ 452
KW+
Sbjct: 327 KWE 329
>AF338767-1|AAL15621.1| 1041|Caenorhabditis elegans UNC-83 protein.
Length = 1041
Score = 28.3 bits (60), Expect = 8.2
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +3
Query: 264 EENVKDFLDAQWDEEDVKEAVNALRKLAIEDQEKSVEGLVTIPGEDASKEDQIEGLVKNV 443
EE+ D D E V + + A + E ++G VT+ +S EDQ+ N
Sbjct: 267 EESEADEEDRHSQTETVVTEDDNVLPFAENEYESIMDGRVTVDSCTSSSEDQMVEQSTNK 326
Query: 444 KWQ 452
KW+
Sbjct: 327 KWE 329
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,829,335
Number of Sequences: 27780
Number of extensions: 395945
Number of successful extensions: 1095
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1090
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2381234086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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