Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_J01
(945 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647 36 0.062
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 35 0.11
09_04_0684 - 19442335-19442990,19443774-19443839,19443935-194440... 34 0.14
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 31 1.0
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 31 1.0
09_01_0165 - 2436769-2437442,2438159-2438224,2438318-2438415,243... 31 1.8
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 30 2.3
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892... 30 2.3
10_06_0039 - 9966744-9967535,9968241-9968482,9969021-9969223,996... 29 4.1
09_01_0037 - 604001-604957 29 4.1
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504... 29 4.1
04_01_0162 + 1845295-1846317,1846430-1846565,1848436-1848626,184... 29 4.1
02_01_0434 + 3158637-3159319,3159460-3159576,3160064-3160226,316... 29 4.1
02_05_0686 - 30900748-30902167,30903442-30904742 29 7.1
11_06_0453 + 23781803-23781814,23782700-23782781,23783334-23784160 28 9.4
>01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647
Length = 252
Score = 35.5 bits (78), Expect = 0.062
Identities = 22/60 (36%), Positives = 24/60 (40%)
Frame = +3
Query: 459 GPXPXPPPXXPXPRXFGXGGXXFPXPXXGGFPXSPKWGGYPGKXLXTQGPQKGPKPLKRG 638
GP P P P P P+ G P G P PK G P GP+ PKP K G
Sbjct: 160 GPKPKPKPSPPKPKP----GPKPKPPKPGPKPKPPKPGPKPKPKPPKPGPKPKPKPPKPG 215
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 34.7 bits (76), Expect = 0.11
Identities = 23/72 (31%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Frame = +3
Query: 423 SPXPRGRGVXFLGPXPXPPPXXPXPRXFGXGGXXFPXPXXGGFPXSPKWGGYPGKXLXTQ 602
+P P G P P PP PR G G P P G + GG P
Sbjct: 337 APSPSAAGAGSGPPPPPPPAAPAAPRPPGPGPGPPPPPGAAG-----RGGGGPPPPALPG 391
Query: 603 GPQ-KGPKPLKR 635
GP+ +GP P K+
Sbjct: 392 GPRARGPPPFKK 403
Score = 32.3 bits (70), Expect = 0.58
Identities = 25/70 (35%), Positives = 26/70 (37%)
Frame = +3
Query: 468 PXPPPXXPXPRXFGXGGXXFPXPXXGGFPXSPKWGGYPGKXLXTQGPQKGPKPLKRGRXX 647
P PPP P P G G P P P +P PG GP P P GR
Sbjct: 331 PAPPPPAPSPSAAGAGSGPPPPPP----PAAPAAPRPPG-----PGPGPPPPPGAAGRGG 381
Query: 648 GXFSQRPPPP 677
G PPPP
Sbjct: 382 GG----PPPP 387
Score = 29.9 bits (64), Expect = 3.1
Identities = 23/73 (31%), Positives = 23/73 (31%), Gaps = 5/73 (6%)
Frame = +3
Query: 474 PPPXXPXPRXFGXG---GXXFPXPXXGGFPXSPKWGGYPGKXLXTQGPQKGPKPLKRG-- 638
PPP P P G G G P P P P P GP P P
Sbjct: 302 PPPPHPLPPGAGAGAGTGAPPPPPAHPAAPAPPPPAPSPSAAGAGSGPPPPPPPAAPAAP 361
Query: 639 RXXGXFSQRPPPP 677
R G PPPP
Sbjct: 362 RPPGPGPGPPPPP 374
>09_04_0684 -
19442335-19442990,19443774-19443839,19443935-19444032,
19444787-19445157
Length = 396
Score = 34.3 bits (75), Expect = 0.14
Identities = 34/106 (32%), Positives = 40/106 (37%), Gaps = 5/106 (4%)
Frame = +3
Query: 423 SPXPRGRGVXFLGPXPXPPPXXPXPRXFGXGGXXFPXPXXGG----FPXSPKWGGYPG-K 587
SP P G+G P PP P P G P P G P +P GY +
Sbjct: 247 SPPPPGQG-------PVPPRDAP-PMHHAQGNVPPPPPPNAGPPNYQPHAPNPQGYTNYQ 298
Query: 588 XLXTQGPQKGPKPLKRGRXXGXFSQRPPPPLXKXXKNXPXFFXGGP 725
G Q GP P +G G + PPPP N P + GGP
Sbjct: 299 QGGAPGYQGGP-PGYQGSNQG-YQGPPPPPPSAYQGNNPGYQGGGP 342
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 31.5 bits (68), Expect = 1.0
Identities = 22/67 (32%), Positives = 25/67 (37%), Gaps = 1/67 (1%)
Frame = +3
Query: 528 PXPXXGGFPXSPKWGGYPGKXLXTQGPQKGPKPLKRGRXXGXFSQRPPPPLXKXXKNXPX 707
P P GGFP P G Q P G P +G + PPPP + P
Sbjct: 11 PPPPQGGFPPQPPPMNPYGPP-PPQQPAYGHMPPPQGAPPPFLAPPPPPPPGPPPPHQPQ 69
Query: 708 F-FXGGP 725
F F GP
Sbjct: 70 FNFGPGP 76
Score = 31.5 bits (68), Expect = 1.0
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +3
Query: 426 PXPRGRGVXFLGPXPXPPPXXPXP 497
P P+G FL P P PPP P P
Sbjct: 42 PPPQGAPPPFLAPPPPPPPGPPPP 65
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 31.5 bits (68), Expect = 1.0
Identities = 20/56 (35%), Positives = 21/56 (37%)
Frame = +3
Query: 426 PXPRGRGVXFLGPXPXPPPXXPXPRXFGXGGXXFPXPXXGGFPXSPKWGGYPGKXL 593
P PRG G +G P PP P G G P P G P P G G L
Sbjct: 1187 PPPRGHGG--VGGPPTPPGAPAPPMPPGVPGGPPPPPGGRGLPAPPGGRGVVGHGL 1240
Score = 29.5 bits (63), Expect = 4.1
Identities = 29/89 (32%), Positives = 30/89 (33%), Gaps = 4/89 (4%)
Frame = +3
Query: 477 PPXXPXPRXFGXGGXXFPXP--XXGGFPXSPKWGGYPG--KXLXTQGPQKGPKPLKRGRX 644
PP P P G GG P P GG P P G+ G G P P RG
Sbjct: 1136 PPAPPLPE--GIGGVPPPPPVGGLGGPPAPPPPAGFRGGTPPPNAHGGVAPPPPPPRGH- 1192
Query: 645 XGXFSQRPPPPLXKXXKNXPXFFXGGPXP 731
G P PP P GGP P
Sbjct: 1193 -GGVGGPPTPP-GAPAPPMPPGVPGGPPP 1219
>09_01_0165 -
2436769-2437442,2438159-2438224,2438318-2438415,
2439856-2440214
Length = 398
Score = 30.7 bits (66), Expect = 1.8
Identities = 32/103 (31%), Positives = 36/103 (34%), Gaps = 2/103 (1%)
Frame = +3
Query: 423 SPXPRGRGVXFL--GPXPXPPPXXPXPRXFGXGGXXFPXPXXGGFPXSPKWGGYPGKXLX 596
SP P G+G P PPP P P P P G + GG PG
Sbjct: 243 SPPPPGQGPVLPRDAPPMPPPPSPPNPGAPPSYQPHAPNPQAG---YTNYQGGVPGYQGR 299
Query: 597 TQGPQKGPKPLKRGRXXGXFSQRPPPPLXKXXKNXPXFFXGGP 725
G Q G + RG PPPP N P + GGP
Sbjct: 300 APGYQGGNQEY-RGP--------PPPPPSAYQGNNPGYQGGGP 333
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 30.3 bits (65), Expect = 2.3
Identities = 27/96 (28%), Positives = 32/96 (33%), Gaps = 7/96 (7%)
Frame = +3
Query: 414 NKKSPXPRGRGVXFLGPXPXPPPXXP-----XPRXFGXGGXXFPXPXXGGFPXSPKWGGY 578
N+ P P G+ P P PPP P P P P P + + G
Sbjct: 647 NRLVPPPPAPGIGNKFPAPPPPPPPPRSSSRTPTGAATSSKGPPPPPPPPLPPANRTNG- 705
Query: 579 PGKXLXTQGPQKGPKPLKRGRXXGXFSQRP--PPPL 680
PG P P P R G + P PPPL
Sbjct: 706 PG---VPSAPPPPPPPPPANRSNGPSAPAPPLPPPL 738
>01_06_0565 +
30287253-30287502,30287522-30289010,30289133-30289277,
30289679-30289729
Length = 644
Score = 30.3 bits (65), Expect = 2.3
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = +3
Query: 477 PPXXPXPRXFGXGGXXFPXPXXGGFPXSPKWGG 575
PP P P G GG P P G P +P GG
Sbjct: 89 PPCAPTPPQGGGGGYNPPSPSIGTSPTTPGGGG 121
>10_06_0039 -
9966744-9967535,9968241-9968482,9969021-9969223,
9969333-9970645
Length = 849
Score = 29.5 bits (63), Expect = 4.1
Identities = 17/53 (32%), Positives = 19/53 (35%)
Frame = +3
Query: 462 PXPXPPPXXPXPRXFGXGGXXFPXPXXGGFPXSPKWGGYPGKXLXTQGPQKGP 620
P P PPP P P F P P P P G + L P +GP
Sbjct: 327 PPPAPPPPPPPPSRFNNTTPKPPPPPP---PPEPPTGPVSARRLLRPLPAEGP 376
>09_01_0037 - 604001-604957
Length = 318
Score = 29.5 bits (63), Expect = 4.1
Identities = 23/84 (27%), Positives = 28/84 (33%)
Frame = +3
Query: 426 PXPRGRGVXFLGPXPXPPPXXPXPRXFGXGGXXFPXPXXGGFPXSPKWGGYPGKXLXTQG 605
P R GV P P PPP G P P P P P +Q
Sbjct: 182 PVARAGGVVVPPPPPPPPPATSLSLSLSLPGLDHPHPDP-STPSEPAVQLQPPP--PSQM 238
Query: 606 PQKGPKPLKRGRXXGXFSQRPPPP 677
P P +++ F +PPPP
Sbjct: 239 PPPTPSCVRQEPPQMPFQLQPPPP 262
>07_01_0674 +
5047503-5047646,5047808-5047901,5048743-5048828,
5049380-5049429,5049517-5049586,5049668-5049749,
5049867-5050267,5050414-5050941,5051823-5052044
Length = 558
Score = 29.5 bits (63), Expect = 4.1
Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Frame = +3
Query: 456 LGPXPXPPPXXPXPRXF-GXGGXXFPXPXXGGFPXSPKWGGYPGKXLXTQGPQKGPKPLK 632
L P P PPP P P G G P P P P PG+ L P P+PL+
Sbjct: 226 LPPLPPPPPPPPKPANIAGAPGLPLPPPPPPP-PGPPPREIVPGQTLLP--PPPPPRPLQ 282
>04_01_0162 +
1845295-1846317,1846430-1846565,1848436-1848626,
1848780-1848887,1849001-1849204,1849294-1849525,
1849602-1849751,1849830-1850007,1850416-1850519,
1850611-1850933,1851274-1851459,1851672-1851899
Length = 1020
Score = 29.5 bits (63), Expect = 4.1
Identities = 27/106 (25%), Positives = 33/106 (31%), Gaps = 3/106 (2%)
Frame = +3
Query: 423 SPXPRGRGVXFLGPXPXPPPXXPXPRXFGXGGXXFPXPXXGGFPXS--PKWGGYPGKXLX 596
+P P +G P P P P P P G F S P G +
Sbjct: 115 APQPPSQGPFGTAPPPSQGPFGTAPPPSQGPFGTAPPPSQGPFAASVPPSQGPFASAQPP 174
Query: 597 TQGPQK-GPKPLKRGRXXGXFSQRPPPPLXKXXKNXPXFFXGGPXP 731
+ P P G RPPPP+ F+ GGP P
Sbjct: 175 FRPPPSLVQSPTASGMAPPSAYVRPPPPVQSQPPPMQGFY-GGPPP 219
>02_01_0434 +
3158637-3159319,3159460-3159576,3160064-3160226,
3160394-3160600
Length = 389
Score = 29.5 bits (63), Expect = 4.1
Identities = 24/89 (26%), Positives = 28/89 (31%), Gaps = 4/89 (4%)
Frame = +3
Query: 423 SPXPRGRGVXFLGPXPXPPPXXPXPRXFGXGGXXFPXPXXGGFPXSPKWGGYP--GKXLX 596
+P R F P P PPP P + G P F + P G
Sbjct: 11 APFHCSRRHLFFAPPPPPPPPMPAYQYHATGACAAAAPPPFPFFATYSCASLPFHGHLYP 70
Query: 597 TQG--PQKGPKPLKRGRXXGXFSQRPPPP 677
G Q GP P G + PPPP
Sbjct: 71 PCGYQAQMGPAPPGAAFAKGVLAAAPPPP 99
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 28.7 bits (61), Expect = 7.1
Identities = 17/45 (37%), Positives = 17/45 (37%), Gaps = 4/45 (8%)
Frame = +3
Query: 459 GPXPXPPPXXPXPRX----FGXGGXXFPXPXXGGFPXSPKWGGYP 581
GP P PPP P P G G P P GG P G P
Sbjct: 352 GPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPKGGASRPPAAPGVP 396
>11_06_0453 + 23781803-23781814,23782700-23782781,23783334-23784160
Length = 306
Score = 28.3 bits (60), Expect = 9.4
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +3
Query: 438 GRGVXFLGPXPXPPPXXPXPRXFGXGGXXFPXPXXGGF 551
GR + P PPP P P G GG + P GG+
Sbjct: 253 GRVYGYSVPSARPPPLLPPPCYSGGGGGGY-TPYCGGY 289
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,988,327
Number of Sequences: 37544
Number of extensions: 312834
Number of successful extensions: 1128
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2717819680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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