Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_J01
         (945 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    27   0.83 
DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            25   2.5  

>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 27.1 bits (57), Expect = 0.83
 Identities = 23/91 (25%), Positives = 29/91 (31%)
 Frame = +3

Query: 459 GPXPXPPPXXPXPRXFGXGGXXFPXPXXGGFPXSPKWGGYPGKXLXTQGPQKGPKPLKRG 638
           GP    PP    P   G      P P  GG    P     P +     G   G +P  + 
Sbjct: 188 GPQMMRPPGNVGPPRTGTPTQPQP-PRPGGMYPQPPGVPMPMRPQMPPGAVPGMQPGMQP 246

Query: 639 RXXGXFSQRPPPPLXKXXKNXPXFFXGGPXP 731
           R       + PP + +     P    GGP P
Sbjct: 247 RPPSAQGMQRPPMMGQPPPIRPPNPMGGPRP 277


>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 27/88 (30%), Positives = 28/88 (31%), Gaps = 4/88 (4%)
 Frame = +3

Query: 426 PXPRGRGVXFLGPXPXPPPXXPXPRXF---GXGGXXFPXPXXGGFPXSPKWGGYPGKXLX 596
           P P G  V  + P   PPP       F         FP     GFP  P     P     
Sbjct: 533 PPPPGGAVLNIPPQFLPPPLNLLRAPFFPLNPAQLRFP----AGFPNLPNAQPPPAPPPP 588

Query: 597 T-QGPQKGPKPLKRGRXXGXFSQRPPPP 677
              GP   P PL  G   G    RPP P
Sbjct: 589 PPMGPP--PSPLAGGPLGGPAGSRPPLP 614


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 409,584
Number of Sequences: 2352
Number of extensions: 6387
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 103362750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)