Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_I23
(979 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 31 1.1
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 31 1.1
09_01_0165 - 2436769-2437442,2438159-2438224,2438318-2438415,243... 31 1.4
07_03_1136 + 24218601-24218734,24218769-24219906 31 1.4
02_05_0686 - 30900748-30902167,30903442-30904742 30 3.2
01_06_0594 - 30473915-30474533,30474667-30474962 30 3.2
10_08_1055 + 22587122-22587501,22587578-22588097 29 5.6
04_04_1019 + 30166514-30166585,30167207-30167841,30168505-301686... 29 5.6
02_05_0410 + 28744716-28744841,28745361-28745965,28746151-287462... 29 5.6
01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748,332... 29 5.6
09_04_0618 + 18988614-18989102,18989913-18990314,18990555-189908... 28 9.8
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 28 9.8
02_02_0363 + 9446055-9446524,9446658-9446771,9446856-9447281,944... 28 9.8
01_06_0713 - 31402534-31403131,31403281-31403430,31403526-31403728 28 9.8
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 31.5 bits (68), Expect = 1.1
Identities = 20/72 (27%), Positives = 24/72 (33%)
Frame = +2
Query: 761 PRERGPSKPPCSXQXGGRXPTGXGXPLXXXGXGXPPPXXGGXXPPHPPXXPXXXXXXGXF 940
P+ P +PP G P G PPP PP PP P F
Sbjct: 14 PQGGFPPQPPPMNPYGPPPPQQPAYGHMPPPQGAPPPFLAPPPPP-PPGPPPPHQPQFNF 72
Query: 941 XLAPPRKTXXPP 976
PP++ PP
Sbjct: 73 GPGPPQQQQPPP 84
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 31.5 bits (68), Expect = 1.1
Identities = 15/43 (34%), Positives = 16/43 (37%)
Frame = +2
Query: 776 PSKPPCSXQXGGRXPTGXGXPLXXXGXGXPPPXXGGXXPPHPP 904
P PP G + P P G PPP G PP PP
Sbjct: 1122 PPPPPIGGLGGHQAPPAPPLPEGIGGVPPPPPVGGLGGPPAPP 1164
Score = 29.9 bits (64), Expect = 3.2
Identities = 18/48 (37%), Positives = 20/48 (41%)
Frame = +2
Query: 770 RGPSKPPCSXQXGGRXPTGXGXPLXXXGXGXPPPXXGGXXPPHPPXXP 913
RG + PP + GG P P G G PP G PP PP P
Sbjct: 1170 RGGTPPPNAH--GGVAPPPP-PPRGHGGVGGPPTPPGAPAPPMPPGVP 1214
Score = 29.5 bits (63), Expect = 4.3
Identities = 17/46 (36%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Frame = +2
Query: 776 PSKPPCSXQXGGRXPTGXGXP---LXXXGXGXPPPXXGGXXPPHPP 904
P PP G PT G P + G PPP GG P PP
Sbjct: 1185 PPPPPRGHGGVGGPPTPPGAPAPPMPPGVPGGPPPPPGGRGLPAPP 1230
Score = 29.1 bits (62), Expect = 5.6
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = -2
Query: 903 GGXGGXXPPXXGGGNPXPXXXRGXPXPVGXR 811
G PP GG P P RG P P G R
Sbjct: 1203 GAPAPPMPPGVPGGPPPPPGGRGLPAPPGGR 1233
>09_01_0165 -
2436769-2437442,2438159-2438224,2438318-2438415,
2439856-2440214
Length = 398
Score = 31.1 bits (67), Expect = 1.4
Identities = 17/48 (35%), Positives = 18/48 (37%)
Frame = +2
Query: 770 RGPSKPPCSXQXGGRXPTGXGXPLXXXGXGXPPPXXGGXXPPHPPXXP 913
RGP PP S G G P G PPP G PP+ P
Sbjct: 311 RGPPPPPPSAYQGNNPGYQGGGP--GYHGGNPPPYQAGNPPPYQAGNP 356
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 31.1 bits (67), Expect = 1.4
Identities = 20/54 (37%), Positives = 20/54 (37%)
Frame = -2
Query: 933 PXXXXXXGXXGGXGGXXPPXXGGGNPXPXXXRGXPXPVGXRPPXWXLQGGLEGP 772
P G GG GG PP GGG P G G RPP GG P
Sbjct: 92 PGGGGAPGPLGG-GGARPPGGGGGGGPPSLPPGAGGGGGARPPAPGGGGGGGAP 144
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 29.9 bits (64), Expect = 3.2
Identities = 15/43 (34%), Positives = 15/43 (34%)
Frame = +2
Query: 776 PSKPPCSXQXGGRXPTGXGXPLXXXGXGXPPPXXGGXXPPHPP 904
P PP P G P G PPP G PP PP
Sbjct: 327 PPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPP 369
>01_06_0594 - 30473915-30474533,30474667-30474962
Length = 304
Score = 29.9 bits (64), Expect = 3.2
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 421 PFPRSLTRCARSFGCGXRXQLTQRR 495
PFPR+ RC+ S GC R Q+ + R
Sbjct: 96 PFPRAYYRCSSSKGCPARKQVERSR 120
>10_08_1055 + 22587122-22587501,22587578-22588097
Length = 299
Score = 29.1 bits (62), Expect = 5.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 421 PFPRSLTRCARSFGCGXRXQLTQRR 495
P+PR RC+ S GC R Q+ + R
Sbjct: 169 PYPRGYYRCSSSKGCSARKQVERSR 193
>04_04_1019 +
30166514-30166585,30167207-30167841,30168505-30168645,
30169604-30170300
Length = 514
Score = 29.1 bits (62), Expect = 5.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 421 PFPRSLTRCARSFGCGXRXQLTQRR 495
P+PR RC+ S GC R Q+ + R
Sbjct: 280 PYPRGYYRCSSSKGCSARKQVERSR 304
>02_05_0410 +
28744716-28744841,28745361-28745965,28746151-28746270,
28746597-28746737,28748626-28749370
Length = 578
Score = 29.1 bits (62), Expect = 5.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 421 PFPRSLTRCARSFGCGXRXQLTQRR 495
P+PR RC+ S GC R Q+ + R
Sbjct: 328 PYPRGYYRCSSSKGCSARKQVERSR 352
>01_01_0446 +
3321832-3322232,3322398-3322455,3322810-3323748,
3324504-3324654,3324740-3324818,3325826-3325934
Length = 578
Score = 29.1 bits (62), Expect = 5.6
Identities = 16/43 (37%), Positives = 17/43 (39%)
Frame = -2
Query: 903 GGXGGXXPPXXGGGNPXPXXXRGXPXPVGXRPPXWXLQGGLEG 775
GG G PP G P P G P G PP + GG G
Sbjct: 344 GGGPGSYPPSYGAPPPNPPYSGGAPGGQGSLPPSY--DGGYGG 384
>09_04_0618 +
18988614-18989102,18989913-18990314,18990555-18990806,
18991564-18991941,18992350-18992426,18992700-18992808,
18993424-18993574,18993810-18993903,18997072-18997474,
18997590-18997742,18998115-18998474
Length = 955
Score = 28.3 bits (60), Expect = 9.8
Identities = 14/33 (42%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
Frame = -2
Query: 894 GGXXPPXXGGGNPXPXXXR---GXPXPVGXRPP 805
GG PP GGN P R P P G PP
Sbjct: 412 GGGMPPYPPGGNAPPHHPRQEPAPPHPTGGMPP 444
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 28.3 bits (60), Expect = 9.8
Identities = 17/50 (34%), Positives = 20/50 (40%)
Frame = +2
Query: 764 RERGPSKPPCSXQXGGRXPTGXGXPLXXXGXGXPPPXXGGXXPPHPPXXP 913
R+ +KPP + G P G G P PPP PP PP P
Sbjct: 243 RQPEANKPPAAP---GTLPNGSGGPPRPPPPQVPPPPPQAPPPP-PPNAP 288
>02_02_0363 +
9446055-9446524,9446658-9446771,9446856-9447281,
9447812-9447893,9447964-9448020,9448633-9448881,
9448978-9449109,9449163-9449291
Length = 552
Score = 28.3 bits (60), Expect = 9.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 421 PFPRSLTRCARSFGCGXRXQLTQRR 495
P+PR RC+ S GC R Q+ + R
Sbjct: 192 PYPRGYYRCSSSKGCPARKQVERSR 216
>01_06_0713 - 31402534-31403131,31403281-31403430,31403526-31403728
Length = 316
Score = 28.3 bits (60), Expect = 9.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 421 PFPRSLTRCARSFGCGXRXQLTQRR 495
P+PR RC+ S GC R Q+ + R
Sbjct: 115 PYPRGYYRCSSSKGCPARKQVERSR 139
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,918,570
Number of Sequences: 37544
Number of extensions: 311565
Number of successful extensions: 1055
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2846681820
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -