Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_I23
         (979 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    25   4.6  
AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP prot...    24   6.0  
AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    24   8.0  

>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 16/53 (30%), Positives = 17/53 (32%)
 Frame = +2

Query: 755 LXPRERGPSKPPCSXQXGGRXPTGXGXPLXXXGXGXPPPXXGGXXPPHPPXXP 913
           + P    P  PP       R P   G P         PP  GG   P PP  P
Sbjct: 176 MDPARPNPGMPPGPQMM--RPPGNVGPPRTGTPTQPQPPRPGGMY-PQPPGVP 225


>AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP
           protein.
          Length = 151

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 17/57 (29%), Positives = 19/57 (33%), Gaps = 1/57 (1%)
 Frame = +2

Query: 809 GRXPTGXGXPLXXXGXGXP-PPXXGGXXPPHPPXXPXXXXXXGXFXLAPPRKTXXPP 976
           G  P   G P    G   P PP   G  PP P   P          + PP  +  PP
Sbjct: 90  GMIPGMPGAPPLLMGPNGPLPPPMMGMRPP-PMMVPTMGMPPMGLGMRPPVMSAAPP 145


>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 19/69 (27%), Positives = 20/69 (28%), Gaps = 2/69 (2%)
 Frame = -2

Query: 975 GGXXVXRGGARXXXPXXXXXXGXXGGXGGXXPPXXGG--GNPXPXXXRGXPXPVGXRPPX 802
           GG  V         P      G  G  G   P    G  G P P   RG P   G   P 
Sbjct: 447 GGQGVPGRPGPEGMPGDKGDKGESGSVGMPGPQGPRGYPGQPGPEGLRGEPGQPGYGIPG 506

Query: 801 WXLQGGLEG 775
                G+ G
Sbjct: 507 QKGNAGMAG 515


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 602,312
Number of Sequences: 2352
Number of extensions: 7687
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 563,979
effective HSP length: 65
effective length of database: 411,099
effective search space used: 106885740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)