Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_I22
         (985 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       31   0.016
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    23   3.2  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    23   3.2  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    23   3.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   9.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   9.8  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 31.1 bits (67), Expect = 0.016
 Identities = 19/57 (33%), Positives = 21/57 (36%)
 Frame = +2

Query: 236 PPXXARGPPPXPPPXXRGLXRGXXGXPGPGPXPLXXPPTTXPPXXXPSLFLXRXGGG 406
           P   A GP P P    +   RG    P  GP P   PP   PP   PS  +     G
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPP-GGPPGA-PPSQNPSQMMISPASG 70



 Score = 29.5 bits (63), Expect = 0.049
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +2

Query: 188 PPPPXXXXXXGPKXXPPPXXARGPPPXPPP 277
           P P        P+   PP  ++GPPP  PP
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52



 Score = 29.1 bits (62), Expect = 0.064
 Identities = 15/46 (32%), Positives = 16/46 (34%)
 Frame = +1

Query: 223 QXXPPPXXXXGPPPXPPPXXXGPXKGXXGXPWXGPXPPXXPPNHPS 360
           Q   P     GP P P      P +G    P  GP P   P   PS
Sbjct: 12  QSQQPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPS 57



 Score = 23.8 bits (49), Expect = 2.4
 Identities = 10/30 (33%), Positives = 10/30 (33%)
 Frame = +2

Query: 188 PPPPXXXXXXGPKXXPPPXXARGPPPXPPP 277
           P  P       P   PPP    G PP   P
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -3

Query: 89  IYDLFNIEKTKTLRQILRI 33
           IY +FN++  +  R++LRI
Sbjct: 380 IYTIFNLDYRRAFRRLLRI 398


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -3

Query: 89  IYDLFNIEKTKTLRQILRI 33
           IY +FN++  +  R++LRI
Sbjct: 380 IYTIFNLDYRRAFRRLLRI 398


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -3

Query: 89  IYDLFNIEKTKTLRQILRI 33
           IY +FN++  +  R++LRI
Sbjct: 380 IYTIFNLDYRRAFRRLLRI 398


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 9.8
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 259 PPXPPPXXXGP 291
           PP PPP   GP
Sbjct: 343 PPPPPPSSSGP 353


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 9.8
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 256  PPPXPPPXXXG 288
            PPP PPP   G
Sbjct: 1355 PPPPPPPPSSG 1365


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,558
Number of Sequences: 438
Number of extensions: 7716
Number of successful extensions: 19
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32532591
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)