Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_I21
         (945 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G6.02 |dss1||mRNA export protein Dss1|Schizosaccharomyces p...    42   1e-04
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    32   0.14 
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    28   2.2  
SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces...    27   2.9  
SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces p...    27   3.8  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   6.7  
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    26   6.7  

>SPAC3G6.02 |dss1||mRNA export protein Dss1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 71

 Score = 42.3 bits (95), Expect = 1e-04
 Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 3/42 (7%)
 Frame = +1

Query: 214 ENWGTEDA--DDEDVSVWEDNWED-DVIQDDFNQQLRQQLEK 330
           ENW  +D   D  D ++WE+NW+D D+  DDF+ QL+ +L+K
Sbjct: 24  ENWPMKDTELDTGDDTLWENNWDDEDIGDDDFSVQLQAELKK 65


>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 31.9 bits (69), Expect = 0.14
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +1

Query: 208 PAENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQ-LRQQLEKL 333
           P EN   +  D +DVS+  DN   DV QD FN++ ++Q++  L
Sbjct: 378 PQEN-SAQIYDGKDVSMVNDNMHSDVRQDSFNKESIKQRIPSL 419


>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +1

Query: 220 WGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEKLKDQK 345
           W  ++   +D SVW   + +D +     + +  +LEKL D++
Sbjct: 537 WKIKNGSIDDFSVWRSAFANDALDRLLEKVILPKLEKLMDEE 578


>SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +1

Query: 226 TEDADDEDVSV-WEDNWEDDVIQDDFNQQLRQQLEKLKDQKS 348
           TE+A DED SV  E++ E++  +D+   + +Q+    K +KS
Sbjct: 202 TEEASDEDESVDLEEDEEEEDEEDEEGDEEKQEPPSKKSKKS 243


>SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +1

Query: 244 EDVSVWEDNWEDDVIQDDFNQQLRQQLEKLKDQ 342
           + +S+W +    D + D F Q+++ + E LKD+
Sbjct: 162 DKLSIWTETDMSDRVTDAFKQKMQFEAELLKDE 194


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -1

Query: 777 NXPSPXGGGGFXXXGKXXPHPPPXXXEKKK 688
           N P P    GF    +  P PPP   +K+K
Sbjct: 8   NPPPPPPPPGFEPPSQPPPPPPPGYVKKRK 37


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 283 RRLPSCLPKPIHLHHQRLLYPNFPR 209
           R+    L + IH HH+RLL+PN  R
Sbjct: 64  RKQAIILAREIH-HHRRLLHPNITR 87


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,211,492
Number of Sequences: 5004
Number of extensions: 32132
Number of successful extensions: 88
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 481321826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)