Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_I21
(945 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41515-1|AAA91179.1| 70|Homo sapiens DSS1 protein. 69 2e-11
CR456887-1|CAG33168.1| 70|Homo sapiens SHFM1 protein. 69 2e-11
BC032782-1|AAH32782.1| 70|Homo sapiens split hand/foot malform... 69 2e-11
AC073230-1|AAQ93368.1| 70|Homo sapiens unknown protein. 69 2e-11
X15038-1|CAA33142.1| 447|Homo sapiens collagen-like protein pro... 32 3.5
X14963-1|CAA33085.1| 447|Homo sapiens collagen-like protein (44... 32 3.5
S57132-1|AAB25797.1| 1186|Homo sapiens type XVI collagen alpha 1... 32 3.5
M92642-1|AAA58427.1| 1603|Homo sapiens alpha-1 type XVI collagen... 32 3.5
AB209571-1|BAD92808.1| 1463|Homo sapiens alpha 1 type XVI collag... 32 3.5
L41162-1|AAC41947.1| 684|Homo sapiens alpha-3 type IX collagen ... 31 8.1
BC011705-1|AAH11705.1| 684|Homo sapiens collagen, type IX, alph... 31 8.1
BC007574-1|AAH07574.1| 561|Homo sapiens Unknown (protein for IM... 31 8.1
AL035669-10|CAC12750.1| 684|Homo sapiens collagen type IX alpha... 31 8.1
AF026802-1|AAD47357.1| 684|Homo sapiens alpha-3 type IX collage... 31 8.1
>U41515-1|AAA91179.1| 70|Homo sapiens DSS1 protein.
Length = 70
Score = 68.9 bits (161), Expect = 2e-11
Identities = 31/59 (52%), Positives = 38/59 (64%)
Frame = +1
Query: 154 KQKVDLGXXXXXXXXXXXPAENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEK 330
KQ VDLG PAE+W D +DED VWEDNW+DD ++DDF+ QLR +LEK
Sbjct: 5 KQPVDLGLLEEDDEFEEFPAEDWAGLD-EDEDAHVWEDNWDDDNVEDDFSNQLRAELEK 62
>CR456887-1|CAG33168.1| 70|Homo sapiens SHFM1 protein.
Length = 70
Score = 68.9 bits (161), Expect = 2e-11
Identities = 31/59 (52%), Positives = 38/59 (64%)
Frame = +1
Query: 154 KQKVDLGXXXXXXXXXXXPAENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEK 330
KQ VDLG PAE+W D +DED VWEDNW+DD ++DDF+ QLR +LEK
Sbjct: 5 KQPVDLGLLEEDDEFEEFPAEDWAGLD-EDEDAHVWEDNWDDDNVEDDFSNQLRAELEK 62
>BC032782-1|AAH32782.1| 70|Homo sapiens split hand/foot
malformation (ectrodactyly) type 1 protein.
Length = 70
Score = 68.9 bits (161), Expect = 2e-11
Identities = 31/59 (52%), Positives = 38/59 (64%)
Frame = +1
Query: 154 KQKVDLGXXXXXXXXXXXPAENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEK 330
KQ VDLG PAE+W D +DED VWEDNW+DD ++DDF+ QLR +LEK
Sbjct: 5 KQPVDLGLLEEDDEFEEFPAEDWAGLD-EDEDAHVWEDNWDDDNVEDDFSNQLRAELEK 62
>AC073230-1|AAQ93368.1| 70|Homo sapiens unknown protein.
Length = 70
Score = 68.9 bits (161), Expect = 2e-11
Identities = 31/59 (52%), Positives = 38/59 (64%)
Frame = +1
Query: 154 KQKVDLGXXXXXXXXXXXPAENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEK 330
KQ VDLG PAE+W D +DED VWEDNW+DD ++DDF+ QLR +LEK
Sbjct: 5 KQPVDLGLLEEDDEFEEFPAEDWAGLD-EDEDAHVWEDNWDDDNVEDDFSNQLRAELEK 62
>X15038-1|CAA33142.1| 447|Homo sapiens collagen-like protein
protein.
Length = 447
Score = 31.9 bits (69), Expect = 3.5
Identities = 14/28 (50%), Positives = 14/28 (50%)
Frame = +3
Query: 480 PGXGGXPXXGGFXGPPXLKXXXGXLGPP 563
PG G P G GPP LK G GPP
Sbjct: 356 PGKPGQPGLPGVQGPPGLKGVQGEPGPP 383
>X14963-1|CAA33085.1| 447|Homo sapiens collagen-like protein (447
AA) protein.
Length = 447
Score = 31.9 bits (69), Expect = 3.5
Identities = 14/28 (50%), Positives = 14/28 (50%)
Frame = +3
Query: 480 PGXGGXPXXGGFXGPPXLKXXXGXLGPP 563
PG G P G GPP LK G GPP
Sbjct: 356 PGKPGQPGLPGVQGPPGLKGVQGEPGPP 383
>S57132-1|AAB25797.1| 1186|Homo sapiens type XVI collagen alpha 1
chain protein.
Length = 1186
Score = 31.9 bits (69), Expect = 3.5
Identities = 14/28 (50%), Positives = 14/28 (50%)
Frame = +3
Query: 480 PGXGGXPXXGGFXGPPXLKXXXGXLGPP 563
PG G P G GPP LK G GPP
Sbjct: 340 PGKPGQPGLPGVQGPPGLKGVQGEPGPP 367
>M92642-1|AAA58427.1| 1603|Homo sapiens alpha-1 type XVI collagen
protein.
Length = 1603
Score = 31.9 bits (69), Expect = 3.5
Identities = 14/28 (50%), Positives = 14/28 (50%)
Frame = +3
Query: 480 PGXGGXPXXGGFXGPPXLKXXXGXLGPP 563
PG G P G GPP LK G GPP
Sbjct: 757 PGKPGQPGLPGVQGPPGLKGVQGEPGPP 784
>AB209571-1|BAD92808.1| 1463|Homo sapiens alpha 1 type XVI collagen
precursor variant protein.
Length = 1463
Score = 31.9 bits (69), Expect = 3.5
Identities = 14/28 (50%), Positives = 14/28 (50%)
Frame = +3
Query: 480 PGXGGXPXXGGFXGPPXLKXXXGXLGPP 563
PG G P G GPP LK G GPP
Sbjct: 648 PGKPGQPGLPGVQGPPGLKGVQGEPGPP 675
>L41162-1|AAC41947.1| 684|Homo sapiens alpha-3 type IX collagen
protein.
Length = 684
Score = 30.7 bits (66), Expect = 8.1
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +3
Query: 480 PGXGGXPXXGGFXGPPXLKXXXGXLGPP 563
PG G P G GP L+ G LGPP
Sbjct: 216 PGPAGLPGSVGLQGPRGLRGLPGPLGPP 243
>BC011705-1|AAH11705.1| 684|Homo sapiens collagen, type IX, alpha 3
protein.
Length = 684
Score = 30.7 bits (66), Expect = 8.1
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +3
Query: 480 PGXGGXPXXGGFXGPPXLKXXXGXLGPP 563
PG G P G GP L+ G LGPP
Sbjct: 216 PGPAGLPGSVGLQGPRGLRGLPGPLGPP 243
>BC007574-1|AAH07574.1| 561|Homo sapiens Unknown (protein for
IMAGE:3139559) protein.
Length = 561
Score = 30.7 bits (66), Expect = 8.1
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +3
Query: 480 PGXGGXPXXGGFXGPPXLKXXXGXLGPP 563
PG G P G GP L+ G LGPP
Sbjct: 93 PGPAGLPGSVGLQGPRGLRGLPGPLGPP 120
>AL035669-10|CAC12750.1| 684|Homo sapiens collagen type IX alpha 3
protein.
Length = 684
Score = 30.7 bits (66), Expect = 8.1
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +3
Query: 480 PGXGGXPXXGGFXGPPXLKXXXGXLGPP 563
PG G P G GP L+ G LGPP
Sbjct: 216 PGPAGLPGSVGLQGPRGLRGLPGPLGPP 243
>AF026802-1|AAD47357.1| 684|Homo sapiens alpha-3 type IX collagen
protein.
Length = 684
Score = 30.7 bits (66), Expect = 8.1
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +3
Query: 480 PGXGGXPXXGGFXGPPXLKXXXGXLGPP 563
PG G P G GP L+ G LGPP
Sbjct: 216 PGPAGLPGSVGLQGPRGLRGLPGPLGPP 243
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,917,163
Number of Sequences: 237096
Number of extensions: 2012174
Number of successful extensions: 10282
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9651
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12436574528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -