Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_I20
(887 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 115 4e-26
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 115 4e-26
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 113 2e-25
01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748,332... 30 2.8
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 29 3.7
01_02_0030 + 10350505-10351227 29 4.9
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 29 6.5
12_02_0513 - 19906147-19906271,19906470-19906791,19907091-199076... 28 8.6
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 115 bits (277), Expect = 4e-26
Identities = 54/91 (59%), Positives = 63/91 (69%)
Frame = +1
Query: 73 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPTSCASACPWVIFLXNRLKYALTGNE 252
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GP P ++ + NRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Query: 253 VLKIVKQRLXXGDXXVRTXPTYPGGIMGVVS 345
V+ I+ QR D VRT TYP G M V+S
Sbjct: 61 VISILMQRHVLVDGKVRTDKTYPAGFMDVIS 91
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 115 bits (277), Expect = 4e-26
Identities = 54/91 (59%), Positives = 63/91 (69%)
Frame = +1
Query: 73 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPTSCASACPWVIFLXNRLKYALTGNE 252
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GP P ++ + NRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Query: 253 VLKIVKQRLXXGDXXVRTXPTYPGGIMGVVS 345
V+ I+ QR D VRT TYP G M V+S
Sbjct: 61 VISILMQRHVLVDGKVRTDKTYPAGFMDVIS 91
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 113 bits (271), Expect = 2e-25
Identities = 54/90 (60%), Positives = 61/90 (67%)
Frame = +1
Query: 76 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPTSCASACPWVIFLXNRLKYALTGNEV 255
ARG KKHLKRLNAP WMLDKLGG +AP+PS+GP P ++ L NRLKYALT EV
Sbjct: 18 ARGLKKHLKRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYREV 77
Query: 256 LKIVKQRLXXGDXXVRTXPTYPGGIMGVVS 345
+ I+ QR D VRT TYP G M VVS
Sbjct: 78 ISILMQRHVMVDGKVRTDKTYPAGFMDVVS 107
>01_01_0446 +
3321832-3322232,3322398-3322455,3322810-3323748,
3324504-3324654,3324740-3324818,3325826-3325934
Length = 578
Score = 29.9 bits (64), Expect = 2.8
Identities = 19/60 (31%), Positives = 20/60 (33%)
Frame = +1
Query: 664 GAPXFFPXKXTRAPPXXLXPKGAPGGXPXXPRGXKXFFFXXGGXXGVXFSXXXGXGXPPP 843
G P +P PP GAPGG P GG G G G PPP
Sbjct: 345 GGPGSYPPSYGAPPPNPPYSGGAPGGQGSLPPS------YDGGYGGRPMPGGGGPGAPPP 398
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 29.5 bits (63), Expect = 3.7
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = -1
Query: 182 LVGPVDGLGAYTPPSLSNIHALGAFKR 102
L+G G+G Y PPSLSN + AFKR
Sbjct: 51 LLGHGHGVGVYYPPSLSNA-LVAAFKR 76
>01_02_0030 + 10350505-10351227
Length = 240
Score = 29.1 bits (62), Expect = 4.9
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = +1
Query: 100 KRLNAPKAWMLDKLGG--VYAPRPSTGPTSCASACPWVIFLXNRLKYALTGNEVLKI 264
+R+N K +++LGG + AP PST PT +S+ P ++ N + GN+ +K+
Sbjct: 144 ERINHLKE-RIERLGGAALMAPPPSTQPTEASSSLPPLVPYANGA--GMEGNKRMKV 197
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 28.7 bits (61), Expect = 6.5
Identities = 17/36 (47%), Positives = 17/36 (47%)
Frame = +1
Query: 655 GGVGAPXFFPXKXTRAPPXXLXPKGAPGGXPXXPRG 762
GGVG P P APP P G PGG P P G
Sbjct: 1193 GGVGGPPTPPGAP--APPM---PPGVPGGPPPPPGG 1223
>12_02_0513 -
19906147-19906271,19906470-19906791,19907091-19907695,
19908569-19908617
Length = 366
Score = 28.3 bits (60), Expect = 8.6
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = -3
Query: 198 ASTRATCGTG*RSRCIHTAK-FVQHPCFGSV*ALQMLLRASR 76
+S+RA G R+RC+H A V+ P FG + ++L ASR
Sbjct: 37 SSSRAV-KAGRRARCVHHASALVRPPSFGRLAMFVLILSASR 77
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,369,702
Number of Sequences: 37544
Number of extensions: 477754
Number of successful extensions: 1141
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1119
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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