Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_I20
(887 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M58458-1|AAA63255.1| 263|Homo sapiens ribosomal protein S4X iso... 124 6e-28
CR456735-1|CAG33016.1| 263|Homo sapiens RPS4X protein. 124 6e-28
BC100904-1|AAI00905.1| 263|Homo sapiens RPS4X protein protein. 124 6e-28
BC100903-1|AAI00904.1| 263|Homo sapiens RPS4X protein protein. 124 6e-28
BC071662-1|AAH71662.1| 263|Homo sapiens ribosomal protein S4, X... 124 6e-28
BC000472-1|AAH00472.1| 263|Homo sapiens ribosomal protein S4, X... 124 6e-28
AF041428-1|AAB96968.1| 263|Homo sapiens ribosomal protein s4 X ... 124 6e-28
M58459-1|AAA63256.1| 263|Homo sapiens ribosomal protein S4Y iso... 122 2e-27
BC100905-1|AAI00906.1| 263|Homo sapiens ribosomal protein S4, Y... 122 2e-27
BC010286-1|AAH10286.1| 263|Homo sapiens ribosomal protein S4, Y... 122 2e-27
AK222594-1|BAD96314.1| 263|Homo sapiens ribosomal protein S4, Y... 122 2e-27
AK222479-1|BAD96199.1| 263|Homo sapiens ribosomal protein S4, X... 122 2e-27
AF041427-1|AAB96967.1| 263|Homo sapiens ribosomal protein s4 Y ... 122 2e-27
BC100906-1|AAI00907.1| 262|Homo sapiens RPS4Y1 protein protein. 120 9e-27
AF497481-1|AAM18074.1| 263|Homo sapiens ribosomal protein S4 pr... 118 4e-26
Z70767-1|CAA94808.1| 59|Homo sapiens ribosomal protein S4 prot... 90 9e-18
BC007308-1|AAH07308.2| 243|Homo sapiens RPS4X protein protein. 87 8e-17
M22146-1|AAA36597.1| 244|Homo sapiens protein ( Human scar prot... 84 6e-16
U47004-2|AAB19039.1| 1690|Homo sapiens collagen type IV a6 chain... 32 2.4
U47004-1|AAB19038.1| 1691|Homo sapiens collagen type IV a6 chain... 32 2.4
AF439430-1|AAL74416.1| 760|Homo sapiens thyroid peroxidase prot... 32 3.2
U04845-1|AAA19569.2| 1691|Homo sapiens A type IV collagen protein. 31 4.2
L22763-1|AAA16338.1| 542|Homo sapiens alpha-6 type IV collagen ... 31 4.2
D63562-1|BAA09791.1| 1600|Homo sapiens a6(IV) collagen protein. 31 4.2
D21337-1|BAA04809.1| 1678|Homo sapiens collagen protein. 31 4.2
AL136080-2|CAI40758.1| 1691|Homo sapiens collagen type IV alpha ... 31 4.2
AL136080-1|CAI40756.1| 1690|Homo sapiens collagen type IV alpha ... 31 4.2
AL109943-2|CAI42995.1| 1691|Homo sapiens collagen type IV alpha ... 31 4.2
AL109943-1|CAI42993.1| 1690|Homo sapiens collagen type IV alpha ... 31 4.2
AL034369-3|CAI42047.1| 1691|Homo sapiens collagen type IV alpha ... 31 4.2
AL034369-2|CAI42045.1| 1690|Homo sapiens collagen type IV alpha ... 31 4.2
AL031177-13|CAI43140.1| 1691|Homo sapiens collagen type IV alpha... 31 4.2
AL031177-12|CAI43139.1| 1690|Homo sapiens collagen type IV alpha... 31 4.2
Y00406-1|CAA68467.1| 933|Homo sapiens protein ( Human mRNA for ... 30 9.8
X17358-1|CAA35235.1| 876|Homo sapiens protein ( Human mRNA from... 30 9.8
M25715-1|AAA97517.1| 933|Homo sapiens TPO protein. 30 9.8
M17755-1|AAA61217.2| 933|Homo sapiens thyroid peroxidase protein. 30 9.8
J02970-1|AAA61216.1| 876|Homo sapiens TPO protein. 30 9.8
J02969-1|AAA61215.1| 933|Homo sapiens TPO protein. 30 9.8
DQ011222-1|AAY16985.1| 933|Homo sapiens thyroid peroxidase prot... 30 9.8
BC095448-1|AAH95448.1| 933|Homo sapiens thyroid peroxidase prot... 30 9.8
AC105450-1|AAX93261.1| 916|Homo sapiens unknown protein. 30 9.8
AB208960-1|BAD92197.1| 864|Homo sapiens thyroid peroxidase isof... 30 9.8
>M58458-1|AAA63255.1| 263|Homo sapiens ribosomal protein S4X
isoform protein.
Length = 263
Score = 124 bits (298), Expect = 6e-28
Identities = 60/91 (65%), Positives = 65/91 (71%)
Frame = +1
Query: 73 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPTSCASACPWVIFLXNRLKYALTGNE 252
MARGPKKHLKR+ APK WMLDKL GV+APRPSTGP P +IFL NRLKYALTG+E
Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60
Query: 253 VLKIVKQRLXXGDXXVRTXPTYPGGIMGVVS 345
V KI QR D VRT TYP G M V+S
Sbjct: 61 VKKICMQRFIKIDGKVRTDITYPAGFMDVIS 91
>CR456735-1|CAG33016.1| 263|Homo sapiens RPS4X protein.
Length = 263
Score = 124 bits (298), Expect = 6e-28
Identities = 60/91 (65%), Positives = 65/91 (71%)
Frame = +1
Query: 73 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPTSCASACPWVIFLXNRLKYALTGNE 252
MARGPKKHLKR+ APK WMLDKL GV+APRPSTGP P +IFL NRLKYALTG+E
Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60
Query: 253 VLKIVKQRLXXGDXXVRTXPTYPGGIMGVVS 345
V KI QR D VRT TYP G M V+S
Sbjct: 61 VKKICMQRFIKIDGKVRTDITYPAGFMDVIS 91
>BC100904-1|AAI00905.1| 263|Homo sapiens RPS4X protein protein.
Length = 263
Score = 124 bits (298), Expect = 6e-28
Identities = 60/91 (65%), Positives = 65/91 (71%)
Frame = +1
Query: 73 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPTSCASACPWVIFLXNRLKYALTGNE 252
MARGPKKHLKR+ APK WMLDKL GV+APRPSTGP P +IFL NRLKYALTG+E
Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60
Query: 253 VLKIVKQRLXXGDXXVRTXPTYPGGIMGVVS 345
V KI QR D VRT TYP G M V+S
Sbjct: 61 VKKICMQRFIKIDGKVRTDITYPAGFMDVIS 91
>BC100903-1|AAI00904.1| 263|Homo sapiens RPS4X protein protein.
Length = 263
Score = 124 bits (298), Expect = 6e-28
Identities = 60/91 (65%), Positives = 65/91 (71%)
Frame = +1
Query: 73 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPTSCASACPWVIFLXNRLKYALTGNE 252
MARGPKKHLKR+ APK WMLDKL GV+APRPSTGP P +IFL NRLKYALTG+E
Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60
Query: 253 VLKIVKQRLXXGDXXVRTXPTYPGGIMGVVS 345
V KI QR D VRT TYP G M V+S
Sbjct: 61 VKKICMQRFIKIDGKVRTDITYPAGFMDVIS 91
>BC071662-1|AAH71662.1| 263|Homo sapiens ribosomal protein S4,
X-linked protein.
Length = 263
Score = 124 bits (298), Expect = 6e-28
Identities = 60/91 (65%), Positives = 65/91 (71%)
Frame = +1
Query: 73 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPTSCASACPWVIFLXNRLKYALTGNE 252
MARGPKKHLKR+ APK WMLDKL GV+APRPSTGP P +IFL NRLKYALTG+E
Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60
Query: 253 VLKIVKQRLXXGDXXVRTXPTYPGGIMGVVS 345
V KI QR D VRT TYP G M V+S
Sbjct: 61 VKKICMQRFIKIDGKVRTDITYPAGFMDVIS 91
>BC000472-1|AAH00472.1| 263|Homo sapiens ribosomal protein S4,
X-linked protein.
Length = 263
Score = 124 bits (298), Expect = 6e-28
Identities = 60/91 (65%), Positives = 65/91 (71%)
Frame = +1
Query: 73 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPTSCASACPWVIFLXNRLKYALTGNE 252
MARGPKKHLKR+ APK WMLDKL GV+APRPSTGP P +IFL NRLKYALTG+E
Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60
Query: 253 VLKIVKQRLXXGDXXVRTXPTYPGGIMGVVS 345
V KI QR D VRT TYP G M V+S
Sbjct: 61 VKKICMQRFIKIDGKVRTDITYPAGFMDVIS 91
>AF041428-1|AAB96968.1| 263|Homo sapiens ribosomal protein s4 X
isoform protein.
Length = 263
Score = 124 bits (298), Expect = 6e-28
Identities = 60/91 (65%), Positives = 65/91 (71%)
Frame = +1
Query: 73 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPTSCASACPWVIFLXNRLKYALTGNE 252
MARGPKKHLKR+ APK WMLDKL GV+APRPSTGP P +IFL NRLKYALTG+E
Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60
Query: 253 VLKIVKQRLXXGDXXVRTXPTYPGGIMGVVS 345
V KI QR D VRT TYP G M V+S
Sbjct: 61 VKKICMQRFIKIDGKVRTDITYPAGFMDVIS 91
>M58459-1|AAA63256.1| 263|Homo sapiens ribosomal protein S4Y
isoform protein.
Length = 263
Score = 122 bits (293), Expect = 2e-27
Identities = 58/91 (63%), Positives = 64/91 (70%)
Frame = +1
Query: 73 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPTSCASACPWVIFLXNRLKYALTGNE 252
MARGPKKHLKR+ APK WMLDKL GV+APRPSTGP P ++FL NRLKYALTG+E
Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDE 60
Query: 253 VLKIVKQRLXXGDXXVRTXPTYPGGIMGVVS 345
V KI QR D VR TYP G M V+S
Sbjct: 61 VKKICMQRFIKIDGKVRVDVTYPAGFMDVIS 91
>BC100905-1|AAI00906.1| 263|Homo sapiens ribosomal protein S4,
Y-linked 1 protein.
Length = 263
Score = 122 bits (293), Expect = 2e-27
Identities = 58/91 (63%), Positives = 64/91 (70%)
Frame = +1
Query: 73 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPTSCASACPWVIFLXNRLKYALTGNE 252
MARGPKKHLKR+ APK WMLDKL GV+APRPSTGP P ++FL NRLKYALTG+E
Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDE 60
Query: 253 VLKIVKQRLXXGDXXVRTXPTYPGGIMGVVS 345
V KI QR D VR TYP G M V+S
Sbjct: 61 VKKICMQRFIKIDGKVRVDVTYPAGFMDVIS 91
>BC010286-1|AAH10286.1| 263|Homo sapiens ribosomal protein S4,
Y-linked 1 protein.
Length = 263
Score = 122 bits (293), Expect = 2e-27
Identities = 58/91 (63%), Positives = 64/91 (70%)
Frame = +1
Query: 73 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPTSCASACPWVIFLXNRLKYALTGNE 252
MARGPKKHLKR+ APK WMLDKL GV+APRPSTGP P ++FL NRLKYALTG+E
Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDE 60
Query: 253 VLKIVKQRLXXGDXXVRTXPTYPGGIMGVVS 345
V KI QR D VR TYP G M V+S
Sbjct: 61 VKKICMQRFIKIDGKVRVDVTYPAGFMDVIS 91
>AK222594-1|BAD96314.1| 263|Homo sapiens ribosomal protein S4,
Y-linked 1 Y isoform variant protein.
Length = 263
Score = 122 bits (293), Expect = 2e-27
Identities = 58/91 (63%), Positives = 64/91 (70%)
Frame = +1
Query: 73 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPTSCASACPWVIFLXNRLKYALTGNE 252
MARGPKKHLKR+ APK WMLDKL GV+APRPSTGP P ++FL NRLKYALTG+E
Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDE 60
Query: 253 VLKIVKQRLXXGDXXVRTXPTYPGGIMGVVS 345
V KI QR D VR TYP G M V+S
Sbjct: 61 VKKICMQRFIKIDGKVRVDVTYPAGFMDVIS 91
>AK222479-1|BAD96199.1| 263|Homo sapiens ribosomal protein S4,
X-linked X isoform variant protein.
Length = 263
Score = 122 bits (293), Expect = 2e-27
Identities = 59/91 (64%), Positives = 64/91 (70%)
Frame = +1
Query: 73 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPTSCASACPWVIFLXNRLKYALTGNE 252
MARGPKKHLKR+ APK WMLDKL GV+AP PSTGP P +IFL NRLKYALTG+E
Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPHPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60
Query: 253 VLKIVKQRLXXGDXXVRTXPTYPGGIMGVVS 345
V KI QR D VRT TYP G M V+S
Sbjct: 61 VKKICMQRFIKIDGKVRTDITYPAGFMDVIS 91
>AF041427-1|AAB96967.1| 263|Homo sapiens ribosomal protein s4 Y
isoform protein.
Length = 263
Score = 122 bits (293), Expect = 2e-27
Identities = 58/91 (63%), Positives = 64/91 (70%)
Frame = +1
Query: 73 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPTSCASACPWVIFLXNRLKYALTGNE 252
MARGPKKHLKR+ APK WMLDKL GV+APRPSTGP P ++FL NRLKYALTG+E
Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDE 60
Query: 253 VLKIVKQRLXXGDXXVRTXPTYPGGIMGVVS 345
V KI QR D VR TYP G M V+S
Sbjct: 61 VKKICMQRFIKIDGKVRVDVTYPAGFMDVIS 91
>BC100906-1|AAI00907.1| 262|Homo sapiens RPS4Y1 protein protein.
Length = 262
Score = 120 bits (288), Expect = 9e-27
Identities = 57/90 (63%), Positives = 63/90 (70%)
Frame = +1
Query: 76 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPTSCASACPWVIFLXNRLKYALTGNEV 255
ARGPKKHLKR+ APK WMLDKL GV+APRPSTGP P ++FL NRLKYALTG+EV
Sbjct: 1 ARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEV 60
Query: 256 LKIVKQRLXXGDXXVRTXPTYPGGIMGVVS 345
KI QR D VR TYP G M V+S
Sbjct: 61 KKICMQRFIKIDGKVRVDVTYPAGFMDVIS 90
>AF497481-1|AAM18074.1| 263|Homo sapiens ribosomal protein S4
protein.
Length = 263
Score = 118 bits (283), Expect = 4e-26
Identities = 56/91 (61%), Positives = 63/91 (69%)
Frame = +1
Query: 73 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPTSCASACPWVIFLXNRLKYALTGNE 252
MARGPKKHLKR+ APK WMLDKL GV+APRPSTGP P ++FL NRLKYALTG+E
Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDE 60
Query: 253 VLKIVKQRLXXGDXXVRTXPTYPGGIMGVVS 345
V KI Q D VR TYP G + V+S
Sbjct: 61 VKKICMQHFLKIDGKVRVDITYPAGFIDVIS 91
>Z70767-1|CAA94808.1| 59|Homo sapiens ribosomal protein S4
protein.
Length = 59
Score = 90.2 bits (214), Expect = 9e-18
Identities = 41/56 (73%), Positives = 44/56 (78%)
Frame = +1
Query: 73 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPTSCASACPWVIFLXNRLKYAL 240
MARGPKKHLKR+ APK WMLDKL GV+APRPSTGP P +IFL NRLKYAL
Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYAL 56
>BC007308-1|AAH07308.2| 243|Homo sapiens RPS4X protein protein.
Length = 243
Score = 87.0 bits (206), Expect = 8e-17
Identities = 43/71 (60%), Positives = 47/71 (66%)
Frame = +1
Query: 133 DKLGGVYAPRPSTGPTSCASACPWVIFLXNRLKYALTGNEVLKIVKQRLXXGDXXVRTXP 312
DKL GV+APRPSTGP P +IFL NRLKYALTG+EV KI QR D VRT
Sbjct: 1 DKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDI 60
Query: 313 TYPGGIMGVVS 345
TYP G M V+S
Sbjct: 61 TYPAGFMDVIS 71
>M22146-1|AAA36597.1| 244|Homo sapiens protein ( Human scar protein
mRNA, complete cds. ).
Length = 244
Score = 84.2 bits (199), Expect = 6e-16
Identities = 44/73 (60%), Positives = 48/73 (65%)
Frame = +1
Query: 127 MLDKLGGVYAPRPSTGPTSCASACPWVIFLXNRLKYALTGNEVLKIVKQRLXXGDXXVRT 306
MLDKL GV+APRPS GP P +IFL NRLKYALTG+EV KI QR D VRT
Sbjct: 1 MLDKLTGVFAPRPS-GPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRT 59
Query: 307 XPTYPGGIMGVVS 345
TYP G M V+S
Sbjct: 60 DITYPAGFMDVIS 72
>U47004-2|AAB19039.1| 1690|Homo sapiens collagen type IV a6 chain
protein.
Length = 1690
Score = 32.3 bits (70), Expect = 2.4
Identities = 20/51 (39%), Positives = 21/51 (41%), Gaps = 7/51 (13%)
Frame = +3
Query: 387 VKG--GFPXPRXSPRXXGKXXFF-----KXXXXGXPXPKNFPXLXNPXGXP 518
VKG G P P P G+ F K G P PK FP L P G P
Sbjct: 228 VKGDVGLPGPAGPPPSTGELEFMGFPKGKKGSKGEPGPKGFPGLRGPPGFP 278
>U47004-1|AAB19038.1| 1691|Homo sapiens collagen type IV a6 chain
protein.
Length = 1691
Score = 32.3 bits (70), Expect = 2.4
Identities = 20/51 (39%), Positives = 21/51 (41%), Gaps = 7/51 (13%)
Frame = +3
Query: 387 VKG--GFPXPRXSPRXXGKXXFF-----KXXXXGXPXPKNFPXLXNPXGXP 518
VKG G P P P G+ F K G P PK FP L P G P
Sbjct: 229 VKGDVGLPGPAGPPPSTGELEFMGFPKGKKGSKGEPGPKGFPGLRGPPGFP 279
>AF439430-1|AAL74416.1| 760|Homo sapiens thyroid peroxidase
protein.
Length = 760
Score = 31.9 bits (69), Expect = 3.2
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = -1
Query: 248 FPVKAY-FRRFXRKITQGQALAQLVGPVDGLGAYTPPSLSNIHALGAFK 105
FP++ R + +I +A Q VGP +G + P++SN+ + AF+
Sbjct: 270 FPIQIITLRDYIPRILGPEAFQQYVGPYEGYDSTANPTVSNVFSTAAFR 318
>U04845-1|AAA19569.2| 1691|Homo sapiens A type IV collagen protein.
Length = 1691
Score = 31.5 bits (68), Expect = 4.2
Identities = 19/51 (37%), Positives = 21/51 (41%), Gaps = 7/51 (13%)
Frame = +3
Query: 387 VKG--GFPXPRXSPRXXGKXXFF-----KXXXXGXPXPKNFPXLXNPXGXP 518
VKG G P P P G+ F K G P PK FP + P G P
Sbjct: 229 VKGDVGLPGPAGPPPSTGELEFMGFPKGKKGSKGEPGPKGFPGISGPPGFP 279
>L22763-1|AAA16338.1| 542|Homo sapiens alpha-6 type IV collagen
protein.
Length = 542
Score = 31.5 bits (68), Expect = 4.2
Identities = 19/51 (37%), Positives = 21/51 (41%), Gaps = 7/51 (13%)
Frame = +3
Query: 387 VKG--GFPXPRXSPRXXGKXXFF-----KXXXXGXPXPKNFPXLXNPXGXP 518
VKG G P P P G+ F K G P PK FP + P G P
Sbjct: 229 VKGDVGLPGPAGPPPSTGELEFMGFPKGKKGSKGEPGPKGFPGISGPPGFP 279
>D63562-1|BAA09791.1| 1600|Homo sapiens a6(IV) collagen protein.
Length = 1600
Score = 31.5 bits (68), Expect = 4.2
Identities = 19/51 (37%), Positives = 21/51 (41%), Gaps = 7/51 (13%)
Frame = +3
Query: 387 VKG--GFPXPRXSPRXXGKXXFF-----KXXXXGXPXPKNFPXLXNPXGXP 518
VKG G P P P G+ F K G P PK FP + P G P
Sbjct: 224 VKGDVGLPGPAGPPPSTGELEFMGFPKGKKGSKGEPGPKGFPGISGPPGFP 274
>D21337-1|BAA04809.1| 1678|Homo sapiens collagen protein.
Length = 1678
Score = 31.5 bits (68), Expect = 4.2
Identities = 19/51 (37%), Positives = 21/51 (41%), Gaps = 7/51 (13%)
Frame = +3
Query: 387 VKG--GFPXPRXSPRXXGKXXFF-----KXXXXGXPXPKNFPXLXNPXGXP 518
VKG G P P P G+ F K G P PK FP + P G P
Sbjct: 228 VKGDVGLPGPAGPPPSTGELEFMGFPKGKKGSKGEPGPKGFPGISGPPGFP 278
>AL136080-2|CAI40758.1| 1691|Homo sapiens collagen type IV alpha 6
protein.
Length = 1691
Score = 31.5 bits (68), Expect = 4.2
Identities = 19/51 (37%), Positives = 21/51 (41%), Gaps = 7/51 (13%)
Frame = +3
Query: 387 VKG--GFPXPRXSPRXXGKXXFF-----KXXXXGXPXPKNFPXLXNPXGXP 518
VKG G P P P G+ F K G P PK FP + P G P
Sbjct: 229 VKGDVGLPGPAGPPPSTGELEFMGFPKGKKGSKGEPGPKGFPGISGPPGFP 279
>AL136080-1|CAI40756.1| 1690|Homo sapiens collagen type IV alpha 6
protein.
Length = 1690
Score = 31.5 bits (68), Expect = 4.2
Identities = 19/51 (37%), Positives = 21/51 (41%), Gaps = 7/51 (13%)
Frame = +3
Query: 387 VKG--GFPXPRXSPRXXGKXXFF-----KXXXXGXPXPKNFPXLXNPXGXP 518
VKG G P P P G+ F K G P PK FP + P G P
Sbjct: 228 VKGDVGLPGPAGPPPSTGELEFMGFPKGKKGSKGEPGPKGFPGISGPPGFP 278
>AL109943-2|CAI42995.1| 1691|Homo sapiens collagen type IV alpha 6
protein.
Length = 1691
Score = 31.5 bits (68), Expect = 4.2
Identities = 19/51 (37%), Positives = 21/51 (41%), Gaps = 7/51 (13%)
Frame = +3
Query: 387 VKG--GFPXPRXSPRXXGKXXFF-----KXXXXGXPXPKNFPXLXNPXGXP 518
VKG G P P P G+ F K G P PK FP + P G P
Sbjct: 229 VKGDVGLPGPAGPPPSTGELEFMGFPKGKKGSKGEPGPKGFPGISGPPGFP 279
>AL109943-1|CAI42993.1| 1690|Homo sapiens collagen type IV alpha 6
protein.
Length = 1690
Score = 31.5 bits (68), Expect = 4.2
Identities = 19/51 (37%), Positives = 21/51 (41%), Gaps = 7/51 (13%)
Frame = +3
Query: 387 VKG--GFPXPRXSPRXXGKXXFF-----KXXXXGXPXPKNFPXLXNPXGXP 518
VKG G P P P G+ F K G P PK FP + P G P
Sbjct: 228 VKGDVGLPGPAGPPPSTGELEFMGFPKGKKGSKGEPGPKGFPGISGPPGFP 278
>AL034369-3|CAI42047.1| 1691|Homo sapiens collagen type IV alpha 6
protein.
Length = 1691
Score = 31.5 bits (68), Expect = 4.2
Identities = 19/51 (37%), Positives = 21/51 (41%), Gaps = 7/51 (13%)
Frame = +3
Query: 387 VKG--GFPXPRXSPRXXGKXXFF-----KXXXXGXPXPKNFPXLXNPXGXP 518
VKG G P P P G+ F K G P PK FP + P G P
Sbjct: 229 VKGDVGLPGPAGPPPSTGELEFMGFPKGKKGSKGEPGPKGFPGISGPPGFP 279
>AL034369-2|CAI42045.1| 1690|Homo sapiens collagen type IV alpha 6
protein.
Length = 1690
Score = 31.5 bits (68), Expect = 4.2
Identities = 19/51 (37%), Positives = 21/51 (41%), Gaps = 7/51 (13%)
Frame = +3
Query: 387 VKG--GFPXPRXSPRXXGKXXFF-----KXXXXGXPXPKNFPXLXNPXGXP 518
VKG G P P P G+ F K G P PK FP + P G P
Sbjct: 228 VKGDVGLPGPAGPPPSTGELEFMGFPKGKKGSKGEPGPKGFPGISGPPGFP 278
>AL031177-13|CAI43140.1| 1691|Homo sapiens collagen type IV alpha 6
protein.
Length = 1691
Score = 31.5 bits (68), Expect = 4.2
Identities = 19/51 (37%), Positives = 21/51 (41%), Gaps = 7/51 (13%)
Frame = +3
Query: 387 VKG--GFPXPRXSPRXXGKXXFF-----KXXXXGXPXPKNFPXLXNPXGXP 518
VKG G P P P G+ F K G P PK FP + P G P
Sbjct: 229 VKGDVGLPGPAGPPPSTGELEFMGFPKGKKGSKGEPGPKGFPGISGPPGFP 279
>AL031177-12|CAI43139.1| 1690|Homo sapiens collagen type IV alpha 6
protein.
Length = 1690
Score = 31.5 bits (68), Expect = 4.2
Identities = 19/51 (37%), Positives = 21/51 (41%), Gaps = 7/51 (13%)
Frame = +3
Query: 387 VKG--GFPXPRXSPRXXGKXXFF-----KXXXXGXPXPKNFPXLXNPXGXP 518
VKG G P P P G+ F K G P PK FP + P G P
Sbjct: 228 VKGDVGLPGPAGPPPSTGELEFMGFPKGKKGSKGEPGPKGFPGISGPPGFP 278
>Y00406-1|CAA68467.1| 933|Homo sapiens protein ( Human mRNA for
thyroperoxidase. ).
Length = 933
Score = 30.3 bits (65), Expect = 9.8
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -1
Query: 227 RRFXRKITQGQALAQLVGPVDGLGAYTPPSLSNIHALGAFK 105
R + +I +A Q VGP +G + P++SN+ + AF+
Sbjct: 451 RDYIPRILGPEAFQQYVGPYEGYDSTANPTVSNVFSTAAFR 491
>X17358-1|CAA35235.1| 876|Homo sapiens protein ( Human mRNA from
alternatively spliced TPO-2 gene for thyroid peroxidase
(EC.1.11.1.7). ).
Length = 876
Score = 30.3 bits (65), Expect = 9.8
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -1
Query: 227 RRFXRKITQGQALAQLVGPVDGLGAYTPPSLSNIHALGAFK 105
R + +I +A Q VGP +G + P++SN+ + AF+
Sbjct: 451 RDYIPRILGPEAFQQYVGPYEGYDSTANPTVSNVFSTAAFR 491
>M25715-1|AAA97517.1| 933|Homo sapiens TPO protein.
Length = 933
Score = 30.3 bits (65), Expect = 9.8
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -1
Query: 227 RRFXRKITQGQALAQLVGPVDGLGAYTPPSLSNIHALGAFK 105
R + +I +A Q VGP +G + P++SN+ + AF+
Sbjct: 451 RDYIPRILGPEAFQQYVGPYEGYDSTANPTVSNVFSTAAFR 491
>M17755-1|AAA61217.2| 933|Homo sapiens thyroid peroxidase protein.
Length = 933
Score = 30.3 bits (65), Expect = 9.8
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -1
Query: 227 RRFXRKITQGQALAQLVGPVDGLGAYTPPSLSNIHALGAFK 105
R + +I +A Q VGP +G + P++SN+ + AF+
Sbjct: 451 RDYIPRILGPEAFQQYVGPYEGYDSTANPTVSNVFSTAAFR 491
>J02970-1|AAA61216.1| 876|Homo sapiens TPO protein.
Length = 876
Score = 30.3 bits (65), Expect = 9.8
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -1
Query: 227 RRFXRKITQGQALAQLVGPVDGLGAYTPPSLSNIHALGAFK 105
R + +I +A Q VGP +G + P++SN+ + AF+
Sbjct: 451 RDYIPRILGPEAFQQYVGPYEGYDSTANPTVSNVFSTAAFR 491
>J02969-1|AAA61215.1| 933|Homo sapiens TPO protein.
Length = 933
Score = 30.3 bits (65), Expect = 9.8
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -1
Query: 227 RRFXRKITQGQALAQLVGPVDGLGAYTPPSLSNIHALGAFK 105
R + +I +A Q VGP +G + P++SN+ + AF+
Sbjct: 451 RDYIPRILGPEAFQQYVGPYEGYDSTANPTVSNVFSTAAFR 491
>DQ011222-1|AAY16985.1| 933|Homo sapiens thyroid peroxidase
protein.
Length = 933
Score = 30.3 bits (65), Expect = 9.8
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -1
Query: 227 RRFXRKITQGQALAQLVGPVDGLGAYTPPSLSNIHALGAFK 105
R + +I +A Q VGP +G + P++SN+ + AF+
Sbjct: 451 RDYIPRILGPEAFQQYVGPYEGYDSTANPTVSNVFSTAAFR 491
>BC095448-1|AAH95448.1| 933|Homo sapiens thyroid peroxidase
protein.
Length = 933
Score = 30.3 bits (65), Expect = 9.8
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -1
Query: 227 RRFXRKITQGQALAQLVGPVDGLGAYTPPSLSNIHALGAFK 105
R + +I +A Q VGP +G + P++SN+ + AF+
Sbjct: 451 RDYIPRILGPEAFQQYVGPYEGYDSTANPTVSNVFSTAAFR 491
>AC105450-1|AAX93261.1| 916|Homo sapiens unknown protein.
Length = 916
Score = 30.3 bits (65), Expect = 9.8
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -1
Query: 227 RRFXRKITQGQALAQLVGPVDGLGAYTPPSLSNIHALGAFK 105
R + +I +A Q VGP +G + P++SN+ + AF+
Sbjct: 451 RDYIPRILGPEAFQQYVGPYEGYDSTANPTVSNVFSTAAFR 491
>AB208960-1|BAD92197.1| 864|Homo sapiens thyroid peroxidase isoform
d variant protein.
Length = 864
Score = 30.3 bits (65), Expect = 9.8
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -1
Query: 227 RRFXRKITQGQALAQLVGPVDGLGAYTPPSLSNIHALGAFK 105
R + +I +A Q VGP +G + P++SN+ + AF+
Sbjct: 380 RDYIPRILGPEAFQQYVGPYEGYDSTANPTVSNVFSTAAFR 420
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,644,379
Number of Sequences: 237096
Number of extensions: 2877586
Number of successful extensions: 6491
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 4529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6338
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11381686510
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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