Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_I20
         (887 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   101   5e-22
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    33   0.21 
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    33   0.21 
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    33   0.21 
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    30   1.9  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    30   1.9  
AC025722-2|AAK68508.1|  605|Caenorhabditis elegans Hypothetical ...    30   2.5  
Z81124-1|CAB03369.1|  312|Caenorhabditis elegans Hypothetical pr...    29   3.4  
U55366-4|AAA97982.1|  310|Caenorhabditis elegans Collagen protei...    28   7.8  
L09634-3|AAA27965.1|  168|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  101 bits (243), Expect = 5e-22
 Identities = 50/89 (56%), Positives = 58/89 (65%)
 Frame = +1

Query: 79  RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPTSCASACPWVIFLXNRLKYALTGNEVL 258
           RGPKKHLKRL AP  WMLDKLGGV+A RP+ GP     + P  +FL NRLKYAL   E  
Sbjct: 2   RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAK 61

Query: 259 KIVKQRLXXGDXXVRTXPTYPGGIMGVVS 345
           KI+ QR+   D  VRT   +P G M VV+
Sbjct: 62  KILTQRVVRVDGKVRTCHKFPTGFMDVVA 90


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 19/67 (28%), Positives = 20/67 (29%)
 Frame = -1

Query: 839 GGXPXPXXXEKXTPFXPPXXKKXXFXPLGXXGXPPGAPXGXKXXGGARVXFXGKKXGAPT 660
           GG P P      T   PP        P+     PP  P G     G          G P 
Sbjct: 711 GGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPP 770

Query: 659 PPXXXPP 639
           PP   PP
Sbjct: 771 PPPPPPP 777


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 19/67 (28%), Positives = 20/67 (29%)
 Frame = -1

Query: 839 GGXPXPXXXEKXTPFXPPXXKKXXFXPLGXXGXPPGAPXGXKXXGGARVXFXGKKXGAPT 660
           GG P P      T   PP        P+     PP  P G     G          G P 
Sbjct: 711 GGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPP 770

Query: 659 PPXXXPP 639
           PP   PP
Sbjct: 771 PPPPPPP 777


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 19/67 (28%), Positives = 20/67 (29%)
 Frame = -1

Query: 839 GGXPXPXXXEKXTPFXPPXXKKXXFXPLGXXGXPPGAPXGXKXXGGARVXFXGKKXGAPT 660
           GG P P      T   PP        P+     PP  P G     G          G P 
Sbjct: 294 GGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPP 353

Query: 659 PPXXXPP 639
           PP   PP
Sbjct: 354 PPPPPPP 360


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 19/59 (32%), Positives = 21/59 (35%), Gaps = 5/59 (8%)
 Frame = -1

Query: 800 PFXPPXXKKXXFXPLGXXGXPPGAPXGXKXXGGARVXFXGKKXGA-----PTPPXXXPP 639
           P  PP      F P G  G PP  P G +  GG       +   A     P PP   PP
Sbjct: 314 PGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPP 372


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 19/59 (32%), Positives = 21/59 (35%), Gaps = 5/59 (8%)
 Frame = -1

Query: 800 PFXPPXXKKXXFXPLGXXGXPPGAPXGXKXXGGARVXFXGKKXGA-----PTPPXXXPP 639
           P  PP      F P G  G PP  P G +  GG       +   A     P PP   PP
Sbjct: 324 PGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPP 382


>AC025722-2|AAK68508.1|  605|Caenorhabditis elegans Hypothetical
           protein Y50D4C.3 protein.
          Length = 605

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
 Frame = +1

Query: 721 PKGAPGGXPXX--PRGXKXFFFXXGGXXGVXFSXXXGXGXPPPP 846
           P+G  G       PRG   +FF  G   G  F      G PPPP
Sbjct: 453 PRGNQGNFQQQGPPRGTGNYFFQQGPPRGGQFHGGSQQGPPPPP 496


>Z81124-1|CAB03369.1|  312|Caenorhabditis elegans Hypothetical
           protein T21B4.2 protein.
          Length = 312

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 22/68 (32%), Positives = 22/68 (32%), Gaps = 2/68 (2%)
 Frame = +1

Query: 655 GGVGAPXFFPXKXTRAPPXXLXPKGAPG--GXPXXPRGXKXFFFXXGGXXGVXFSXXXGX 828
           GG GAP   P      PP    P G PG  G P  P           G  G         
Sbjct: 187 GGPGAPGNTPSGGAAGPPGPPGPPGGPGNDGQPGGPGNP--------GAPGAVTEVPGQQ 238

Query: 829 GXPPPPXP 852
           G P PP P
Sbjct: 239 GPPGPPGP 246


>U55366-4|AAA97982.1|  310|Caenorhabditis elegans Collagen protein
           139 protein.
          Length = 310

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 17/50 (34%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
 Frame = -2

Query: 838 GXAPXPXXXKKXPXXPPPXKKKXXXTPWGXXGXP--RGXPXGPXLXGXRG 695
           G A  P      P  P P  +     P G  G P   G P GP   G RG
Sbjct: 212 GQAGQPGSSSSEPGQPGPNGQPGPRGPPGQAGSPGGNGQPGGPGQPGQRG 261


>L09634-3|AAA27965.1|  168|Caenorhabditis elegans Hypothetical
           protein C30C11.1 protein.
          Length = 168

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -1

Query: 281 MRRCFTIFRTSFPVKAYFRRFXRKITQGQALAQLVGPVDGLGAYTPPSLSNIH 123
           +R     F   F V  Y     +K+T+  +  +L+ P+D L   T P+ SNIH
Sbjct: 41  VREMIDDFSIVFGVPKYRTSKPKKVTRKFSFTRLLQPIDNL--VTCPACSNIH 91


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,649,640
Number of Sequences: 27780
Number of extensions: 379825
Number of successful extensions: 868
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)