Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_I20
         (887 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.6  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    23   4.9  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          22   8.6  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = +3

Query: 24  LLGNSLRFWLDLILVQHGARP*EAFEALKRSQSMDVGQTWRCVCTETVNRSHKLRECLPL 203
           ++G +LR W    LV HGA    A     +    D+   +  +    VN S  LR C+ L
Sbjct: 4   IIGETLRVWFLSALVVHGA---VAGNPDAKRLYDDLLSNYNKLVRPVVNTSDVLRVCIKL 60


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = +3

Query: 24  LLGNSLRFWLDLILVQHGARP*EAFEALKRSQSMDVGQTWRCVCTETVNRSHKLRECLPL 203
           ++G +LR W    LV HGA    A     +    D+   +  +    VN S  LR C+ L
Sbjct: 4   IIGETLRVWFLSALVVHGA---VAGNPDAKRLYDDLLSNYNKLVRPVVNTSDVLRVCIKL 60


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 253 LRFRSKHTSDDSSGKSPRGKHSRNLWDRL 167
           +RFR      D   +SPRGK+  + +D+L
Sbjct: 31  VRFRRFTIELDKVLESPRGKYEFSKYDKL 59


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -2

Query: 226 DDSSGKSPRGKHSRN 182
           D SSG SP   HS N
Sbjct: 68  DSSSGDSPVSSHSSN 82


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,597
Number of Sequences: 438
Number of extensions: 6145
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)