Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_I19
(866 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1245 + 25154586-25155040,25155519-25155604,25155690-25155733 41 0.001
05_05_0319 - 24080914-24080929,24082320-24082621,24082666-240827... 31 0.90
04_01_0537 + 6970887-6971319,6971428-6971540,6971552-6972016 31 0.90
01_06_1677 + 39092268-39092306,39092395-39092447,39094259-390943... 31 1.6
04_01_0548 + 7103540-7103972,7104081-7104667 30 2.1
08_02_0110 + 12650328-12650552,12650827-12651423,12651480-126518... 30 2.8
07_01_0064 + 463358-464341 29 3.6
04_04_1385 - 33157557-33157655,33157752-33158201,33158864-331590... 29 4.8
12_01_0990 + 10052430-10052895,10053633-10054219 29 6.4
06_03_0575 + 22431744-22432212,22432473-22433077 28 8.4
>07_03_1245 + 25154586-25155040,25155519-25155604,25155690-25155733
Length = 194
Score = 40.7 bits (91), Expect = 0.001
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Frame = +1
Query: 154 VVMASSAETDTPRHYDLNQA--KELFEIFVKEHNREYKDDADRELHYQSFKKHLAEINQL 327
+V A +A+TD + +++ K FE ++KEH R Y ++ Y++FKK + IN+L
Sbjct: 43 IVDADAADTDEDGNNAVDEPAMKAKFEDWMKEHGRIYITKKEKAHRYENFKKAMKGINEL 102
Query: 328 NXK 336
N K
Sbjct: 103 NIK 105
>05_05_0319 -
24080914-24080929,24082320-24082621,24082666-24082787,
24083189-24083534
Length = 261
Score = 31.5 bits (68), Expect = 0.90
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +1
Query: 214 KELFEIFVKEHNREYKDDADRELHYQSFKKHLAEINQLNXKNP 342
K F+ ++KEHNR Y + ++ Y+ FK+ ++ N P
Sbjct: 183 KARFQDWMKEHNRSYSTEEEKARCYEIFKETAIRADKANAVRP 225
>04_01_0537 + 6970887-6971319,6971428-6971540,6971552-6972016
Length = 336
Score = 31.5 bits (68), Expect = 0.90
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +1
Query: 226 EIFVKEHNREYKDDADRELHYQSFKKHLAEINQLNXKN 339
E ++ ++ R YKDDA++ ++ FK ++A I N N
Sbjct: 38 ERWMAQYGRMYKDDAEKARRFEVFKANVAFIESFNAGN 75
>01_06_1677 +
39092268-39092306,39092395-39092447,39094259-39094350,
39094435-39094646,39095196-39095207
Length = 135
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +1
Query: 199 DLNQA-KELFEIFVKEHNREYKDDADRELHYQSFKKHLAEINQLN 330
D QA K F+ ++ + NR YKD+A++ ++ FK + + + N
Sbjct: 85 DEEQALKVRFQEWMNKFNRNYKDEAEKAYRFEVFKSTVQYVEKFN 129
>04_01_0548 + 7103540-7103972,7104081-7104667
Length = 339
Score = 30.3 bits (65), Expect = 2.1
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +1
Query: 226 EIFVKEHNREYKDDADRELHYQSFKKHLAEINQLNXKN 339
E ++ ++ R Y+DDA++ ++ FK ++A I N N
Sbjct: 38 ERWMAQYGRVYRDDAEKARRFEVFKANVAFIESFNAGN 75
>08_02_0110 +
12650328-12650552,12650827-12651423,12651480-12651857,
12651997-12652218,12652407-12652483,12652553-12652631,
12652920-12653105
Length = 587
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Frame = +1
Query: 97 LLIHCAKMNFVSVALLIATVVMASSAETDTPRH-YDLNQAK--ELFEIFVKEHNREY 258
L+IHC +MN+V + V + P H Y L++ K E + E + Y
Sbjct: 410 LIIHCGRMNYVEAEAMKKPVAYLNPCRISKPNHTYTLDEKKLPEHIKAMTPEERKAY 466
>07_01_0064 + 463358-464341
Length = 327
Score = 29.5 bits (63), Expect = 3.6
Identities = 20/62 (32%), Positives = 32/62 (51%)
Frame = +1
Query: 145 IATVVMASSAETDTPRHYDLNQAKELFEIFVKEHNREYKDDADRELHYQSFKKHLAEINQ 324
+A V MAS A T RH + ++ EH R YKD A++ ++ FK ++ I++
Sbjct: 1 MAKVTMASRAGTMEARH----------DKWMAEHGRTYKDAAEKARRFRVFKANVDLIDR 50
Query: 325 LN 330
N
Sbjct: 51 SN 52
>04_04_1385 -
33157557-33157655,33157752-33158201,33158864-33159004,
33159058-33159329,33160371-33160821
Length = 470
Score = 29.1 bits (62), Expect = 4.8
Identities = 16/71 (22%), Positives = 32/71 (45%)
Frame = +1
Query: 118 MNFVSVALLIATVVMASSAETDTPRHYDLNQAKELFEIFVKEHNREYKDDADRELHYQSF 297
M + ALL+ + A+ + +A+ L+ + EH + Y + E Y +F
Sbjct: 5 MALAAAALLLLLSLAAADMSIVSYGERSEEEARRLYAEWKAEHGKSYNAVGEEERRYAAF 64
Query: 298 KKHLAEINQLN 330
+ +L I++ N
Sbjct: 65 RDNLRYIDEHN 75
>12_01_0990 + 10052430-10052895,10053633-10054219
Length = 350
Score = 28.7 bits (61), Expect = 6.4
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +1
Query: 226 EIFVKEHNREYKDDADRELHYQSFKKHLAEINQLN--XKNPY 345
E ++ +H R YKD A++ + FK ++A I N KN Y
Sbjct: 45 ERWMAQHGRVYKDAAEKARRLEVFKANVAFIESFNAGGKNRY 86
>06_03_0575 + 22431744-22432212,22432473-22433077
Length = 357
Score = 28.3 bits (60), Expect = 8.4
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +1
Query: 199 DLNQAKELFEIFVKEHNREYKDDADRELHYQSFKKHLAEINQLN 330
D + +E +E + +H R YKD ++ ++ F+ + I+ N
Sbjct: 41 DDSAMRERYEKWAADHGRTYKDSLEKARRFEVFRTNALFIDSFN 84
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,400,222
Number of Sequences: 37544
Number of extensions: 278451
Number of successful extensions: 798
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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