Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_I19
         (866 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    24   1.6  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   2.8  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    23   2.8  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   6.4  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   6.4  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   8.4  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 132 CGVVNSHSSNGVLGG 176
           CGV N H   G+LGG
Sbjct: 329 CGVHNLHGMPGILGG 343


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 489 TACKCLKFSNLINNYFXPLV 548
           T  KCL+F   +NN   P V
Sbjct: 341 TKAKCLQFREYLNNELGPAV 360


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 416 LPAKKHXSATSVYRNAIPTK*MXCDCL*MFKIFEF 520
           LP +K  + TS+  N   T+    D L + +++EF
Sbjct: 76  LPDRKFQTVTSIEGNTFKTETQVNDSLKVTRLYEF 110


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 66  YVHSKCQNLKEFPIVRSVMKTV 1
           YVH       E P+VR + KT+
Sbjct: 495 YVHEDVSPTFEKPLVREIEKTI 516


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +1

Query: 190 RHYDLNQAKELFEIFV-KEHNREYKDDADRELHYQSFKKHLAE 315
           RH D N  +   E    ++ +REYK D   +  +   +KHL E
Sbjct: 238 RHEDRNSYRNDGERSCSRDRSREYKKDRRYDQLHNVEEKHLRE 280


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 9/34 (26%), Positives = 15/34 (44%)
 Frame = +2

Query: 215 KNCSKFSSKNITGNTRMMPTESCIINHSRNTWQR 316
           K C +F      G  ++ P +  I+   R  W+R
Sbjct: 46  KECEQFLGPVGFGGVQVSPVQENIVIDKRPWWER 79


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,963
Number of Sequences: 438
Number of extensions: 3379
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28038087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)