Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_I18
         (907 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar...    26   6.4  
SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces p...    26   6.4  

>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
           Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 26/78 (33%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
 Frame = -3

Query: 422 PGWTQDDSYRIRRSGRAETGGSCTQ--PSLERTTYTELRYLQREL*ESATLPEGRKADRY 249
           PG T+D  +RI R+GRA   G+      S       EL  +  E  +    P+  +  RY
Sbjct: 447 PGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNAKQARELVSILSEAKQDID-PKLEEMARY 505

Query: 248 PVSGRVGNRRAHEGASRG 195
              GR GN R   G  RG
Sbjct: 506 SSGGRGGNYR-RGGYGRG 522


>SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 509

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -1

Query: 574 WLQQS-ADTKYCSSSVAVVRPPLQELCST 491
           WL    AD KY    +AV+  PL+E C T
Sbjct: 371 WLSSKVADFKYEPIQMAVLHIPLKEFCET 399


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,107,595
Number of Sequences: 5004
Number of extensions: 60972
Number of successful extensions: 135
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)