Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_I16
(919 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0045 - 354825-355504,355602-355776,355847-355927,357266-35... 31 1.7
02_03_0068 + 14711891-14712418 31 1.7
09_02_0556 + 10637362-10637575,10637728-10637825 30 2.2
06_03_0475 - 21217253-21217639,21217717-21218757 30 2.2
03_06_0485 + 34242121-34243188 30 2.2
02_02_0720 + 13321852-13322092,13324106-13324200 30 3.0
01_06_1453 - 37465665-37466627 29 3.9
11_06_0482 - 24095258-24095827,24095934-24095993 29 5.2
03_06_0273 + 32787021-32787434,32788096-32788221,32788305-327883... 29 5.2
02_01_0547 + 4032161-4032418,4032747-4032953,4033216-4033569 29 5.2
01_05_0401 - 21801454-21801888 29 5.2
01_05_0384 - 21668869-21669121,21669802-21669889,21670036-21670168 29 6.8
03_03_0048 + 14065317-14065433,14065646-14065726,14066566-140669... 28 9.0
>12_01_0045 -
354825-355504,355602-355776,355847-355927,357266-357498,
357921-358104
Length = 450
Score = 30.7 bits (66), Expect = 1.7
Identities = 16/39 (41%), Positives = 17/39 (43%)
Frame = -1
Query: 331 GGSHRFSGPRRPHAEDAIXGGTESSIHEIGDAPPRARLL 215
G SHRF PRR A G E E+G RA L
Sbjct: 18 GWSHRFPAPRRARRSGAELAGVERDGTELGQVRERAEAL 56
>02_03_0068 + 14711891-14712418
Length = 175
Score = 30.7 bits (66), Expect = 1.7
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = -1
Query: 388 RSGRAASHTLQASSGDWSSGGSHRFSGPRRPHAEDAIXGGTESSIHEIGDAPPRAR 221
R ++ H + W+SGGS +R AI GG E E ++P R R
Sbjct: 33 RETSSSRHRREEERVGWASGGSSGRGARQREEERRAIRGGGEEEKEEEEESPGRRR 88
>09_02_0556 + 10637362-10637575,10637728-10637825
Length = 103
Score = 30.3 bits (65), Expect = 2.2
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +3
Query: 264 SVPPXIASSACGRRGPENLCDPPLDQSPELACRVCDAARPDRR 392
S P S RR P L PPL +SP L+ +A R RR
Sbjct: 28 SSTPSAVSGRHRRRAPATLAVPPLPRSPSLSSVPVEARRGGRR 70
>06_03_0475 - 21217253-21217639,21217717-21218757
Length = 475
Score = 30.3 bits (65), Expect = 2.2
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +1
Query: 295 AAAAGLRTCATLHSTSLRSWLAGCATRLGLTAA 393
AAA G +C+T+HS L S GC T G+T A
Sbjct: 85 AAAGGAESCSTVHSV-LGSVEFGCGTSSGVTIA 116
>03_06_0485 + 34242121-34243188
Length = 355
Score = 30.3 bits (65), Expect = 2.2
Identities = 22/70 (31%), Positives = 30/70 (42%)
Frame = -1
Query: 427 GLLRSVR*SDGWRRSGRAASHTLQASSGDWSSGGSHRFSGPRRPHAEDAIXGGTESSIHE 248
G LR+V G RR+ R S SS S+ GS +G GG+ S+
Sbjct: 97 GALRNVPVGGGCRRNKRTKS---SKSSSSTSAAGSASATGGTSSSTSSTATGGSSSAAAA 153
Query: 247 IGDAPPRARL 218
PP+A+L
Sbjct: 154 AAMMPPQAQL 163
>02_02_0720 + 13321852-13322092,13324106-13324200
Length = 111
Score = 29.9 bits (64), Expect = 3.0
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 273 PXIASSACGRRGPENLCDPPLDQSP 347
P + SSAC R G N+ +P +D+SP
Sbjct: 53 PPVGSSACPRHGISNVDEPFVDRSP 77
>01_06_1453 - 37465665-37466627
Length = 320
Score = 29.5 bits (63), Expect = 3.9
Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Frame = -1
Query: 427 GLLRSVR*SDGWRRSGRAASHTLQASSGDWSSGG-----SHRFSGPRRPHAEDAIXGGTE 263
G LR+V G R++ R S + S+ D S G HRF GP RP D + G
Sbjct: 63 GSLRNVPVGGGCRKNRRGKSSSSARSAADAVSSGRDAAFGHRFPGPVRP---DMVLEGMV 119
Query: 262 SSIHEIGDAPP 230
+ G A P
Sbjct: 120 GNPANPGQAMP 130
>11_06_0482 - 24095258-24095827,24095934-24095993
Length = 209
Score = 29.1 bits (62), Expect = 5.2
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +3
Query: 630 QFYSSQCRRVYGRPNKATVTAANEQEARCSDTHRLAGDSAG 752
QFYS Q ++ P A A E+E C LA S+G
Sbjct: 75 QFYSFQSSKIMSPPAAAAAAADQEEEEECDLQLTLATGSSG 115
>03_06_0273 +
32787021-32787434,32788096-32788221,32788305-32788378,
32788468-32788537,32788622-32788677,32788762-32788833,
32788945-32789039,32789196-32789262,32789359-32789488,
32789578-32789793,32789887-32790017,32790719-32790893,
32790977-32791067,32792151-32792308,32792763-32792951,
32793066-32793125
Length = 707
Score = 29.1 bits (62), Expect = 5.2
Identities = 21/54 (38%), Positives = 25/54 (46%)
Frame = -2
Query: 381 AEPRRTPCKPAPETGRVEGRTGSQARGGRTLKTRSXGAPKAAFTKSGMHLRGRD 220
A+P +P PAP GR GR G A GR KT + G + A G R D
Sbjct: 24 ADPAASPVSPAPR-GRT-GRRGG-AAAGRGNKTVAEGGGRKALKPRGKGCRAVD 74
>02_01_0547 + 4032161-4032418,4032747-4032953,4033216-4033569
Length = 272
Score = 29.1 bits (62), Expect = 5.2
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = -1
Query: 502 SDTLSGGESYEAGMRAAER--QHVMLLGLLRSVR*SDGWRRSGRAASHTLQASSGDW 338
++ L G+S A R H +LL R+ ++GWRRSG A L A++ +W
Sbjct: 191 AEALHIGDSMRKDYAPARRAGMHALLLDRFRTAE-AEGWRRSGAAVLPDL-AAAREW 245
>01_05_0401 - 21801454-21801888
Length = 144
Score = 29.1 bits (62), Expect = 5.2
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 9/49 (18%)
Frame = -1
Query: 403 SDGWRRSGRAASHTLQASSGDWSSGGSHR---------FSGPRRPHAED 284
S GWRR+ +A G ++GG+ R SGPRRP AED
Sbjct: 57 SAGWRRTAMLVGDAAEAGGGAEANGGARRDLDGGGRWCSSGPRRP-AED 104
>01_05_0384 - 21668869-21669121,21669802-21669889,21670036-21670168
Length = 157
Score = 28.7 bits (61), Expect = 6.8
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = -2
Query: 375 PRRTPCKPAPETGRVEGRTGSQARGGRTLKTRSXGAPKAAFTKSGMHL 232
PRR P P GR EG+ G + RGG R G + + G HL
Sbjct: 3 PRRWEPPPPPAGGRGEGK-GGEVRGGER-PVRIAGEVRGGERRRGGHL 48
>03_03_0048 +
14065317-14065433,14065646-14065726,14066566-14066967,
14067131-14067199,14067278-14067360,14067503-14067555,
14067659-14067780,14068033-14068386,14068479-14068578,
14068663-14068895
Length = 537
Score = 28.3 bits (60), Expect = 9.0
Identities = 20/61 (32%), Positives = 27/61 (44%)
Frame = +3
Query: 210 ATRSRALGGASPIS*MLLSVPPXIASSACGRRGPENLCDPPLDQSPELACRVCDAARPDR 389
A R+R G A + L+ +PP + RRG C P ++ LAC A RP
Sbjct: 129 ALRARRDGIAERLYTALVVLPP--SPPRRRRRGRTGGCSSPTPRAASLACAAPTAPRPSS 186
Query: 390 R 392
R
Sbjct: 187 R 187
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,173,939
Number of Sequences: 37544
Number of extensions: 516995
Number of successful extensions: 1663
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1659
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2612387020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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