Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_I16
(919 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39745-7|AAA80449.1| 612|Caenorhabditis elegans Uncoordinated p... 161 5e-40
M80241-1|AAA28157.1| 612|Caenorhabditis elegans unc-6 protein. 161 5e-40
U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related... 120 1e-27
Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p... 54 2e-07
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ... 54 2e-07
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha... 54 2e-07
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 47 2e-05
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 47 2e-05
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 47 2e-05
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 47 2e-05
AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat... 46 5e-05
U41993-7|AAA83450.2| 733|Caenorhabditis elegans Temporarily ass... 31 0.87
X64435-1|CAA45773.1| 318|Caenorhabditis elegans collagen protein. 30 2.7
U41624-3|AAF99944.1| 318|Caenorhabditis elegans Dumpy : shorter... 30 2.7
Z71262-1|CAA95813.1| 418|Caenorhabditis elegans Hypothetical pr... 28 8.1
>U39745-7|AAA80449.1| 612|Caenorhabditis elegans Uncoordinated
protein 6 protein.
Length = 612
Score = 161 bits (392), Expect = 5e-40
Identities = 84/178 (47%), Positives = 110/178 (61%), Gaps = 4/178 (2%)
Frame = +3
Query: 273 PXIASSACGRRGPENLCDPPLDQSPE----LACRVCDAARPDRRHPSLYLTDLNNPNNIT 440
P IAS CG P+ C + + P+ C CDA + HP+ LTDLN+ N+T
Sbjct: 59 PVIASDTCGTNRPDKYCT--VKEGPDGIIREQCDTCDARNHFQSHPASLLTDLNSIGNMT 116
Query: 441 CWRSAALMPASYDSPPDNVSLTLSLGKKYELTYISLQFCPKSARPDSVAIYKSADYGLNW 620
CW S + P NVSLTLSLGKK+ELTY+S+ FC S PDS+A+YKSAD+G W
Sbjct: 117 CWVSTPSLS------PQNVSLTLSLGKKFELTYVSMHFC--SRLPDSMALYKSADFGKTW 168
Query: 621 QPFQFYSSQCRRVYGRPNKATVTAANEQEARCSDTHRLAGDSAGXARLAFSTLEGRPA 794
PFQFYSS+CRR++GR ++T +NEQEA C+ +H + G R+AF LE RP+
Sbjct: 169 TPFQFYSSECRRIFGRDPDVSITKSNEQEAVCTASHIM---GPGGNRVAFPFLENRPS 223
Score = 41.1 bits (92), Expect = 0.001
Identities = 15/25 (60%), Positives = 21/25 (84%), Gaps = 1/25 (4%)
Frame = +2
Query: 203 DPCYEES-RPRRCIPDFVNAAFGAP 274
DPC++ + RP RC+P+F+NAAFG P
Sbjct: 35 DPCHDHTGRPVRCVPEFINAAFGKP 59
Score = 33.5 bits (73), Expect = 0.22
Identities = 15/18 (83%), Positives = 15/18 (83%)
Frame = +2
Query: 791 SAGNFXLSPVLQDWVTAT 844
SA NF SPVLQDWVTAT
Sbjct: 223 SAQNFENSPVLQDWVTAT 240
>M80241-1|AAA28157.1| 612|Caenorhabditis elegans unc-6 protein.
Length = 612
Score = 161 bits (392), Expect = 5e-40
Identities = 84/178 (47%), Positives = 110/178 (61%), Gaps = 4/178 (2%)
Frame = +3
Query: 273 PXIASSACGRRGPENLCDPPLDQSPE----LACRVCDAARPDRRHPSLYLTDLNNPNNIT 440
P IAS CG P+ C + + P+ C CDA + HP+ LTDLN+ N+T
Sbjct: 59 PVIASDTCGTNRPDKYCT--VKEGPDGIIREQCDTCDARNHFQSHPASLLTDLNSIGNMT 116
Query: 441 CWRSAALMPASYDSPPDNVSLTLSLGKKYELTYISLQFCPKSARPDSVAIYKSADYGLNW 620
CW S + P NVSLTLSLGKK+ELTY+S+ FC S PDS+A+YKSAD+G W
Sbjct: 117 CWVSTPSLS------PQNVSLTLSLGKKFELTYVSMHFC--SRLPDSMALYKSADFGKTW 168
Query: 621 QPFQFYSSQCRRVYGRPNKATVTAANEQEARCSDTHRLAGDSAGXARLAFSTLEGRPA 794
PFQFYSS+CRR++GR ++T +NEQEA C+ +H + G R+AF LE RP+
Sbjct: 169 TPFQFYSSECRRIFGRDPDVSITKSNEQEAVCTASHIM---GPGGNRVAFPFLENRPS 223
Score = 41.1 bits (92), Expect = 0.001
Identities = 15/25 (60%), Positives = 21/25 (84%), Gaps = 1/25 (4%)
Frame = +2
Query: 203 DPCYEES-RPRRCIPDFVNAAFGAP 274
DPC++ + RP RC+P+F+NAAFG P
Sbjct: 35 DPCHDHTGRPVRCVPEFINAAFGKP 59
Score = 33.5 bits (73), Expect = 0.22
Identities = 15/18 (83%), Positives = 15/18 (83%)
Frame = +2
Query: 791 SAGNFXLSPVLQDWVTAT 844
SA NF SPVLQDWVTAT
Sbjct: 223 SAQNFENSPVLQDWVTAT 240
>U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related.
see also lmb-protein 2 protein.
Length = 1535
Score = 120 bits (290), Expect = 1e-27
Identities = 62/170 (36%), Positives = 84/170 (49%)
Frame = +3
Query: 285 SSACGRRGPENLCDPPLDQSPELACRVCDAARPDRRHPSLYLTDLNNPNNITCWRSAALM 464
++ CG + P C C CD HP+ YLTD N NN T W+S +
Sbjct: 52 TNTCGTKRPTKFCVQSGHTGQRSVCETCDDRHEGFSHPAKYLTDFNVGNNETWWQSDTMQ 111
Query: 465 PASYDSPPDNVSLTLSLGKKYELTYISLQFCPKSARPDSVAIYKSADYGLNWQPFQFYSS 644
P +LTL LGK +++TY+ L+F S RP+S IYK W+P+QFYS
Sbjct: 112 EGQ--QYPTTTNLTLVLGKSFDITYVRLKFI--SPRPESFTIYKKTHTDSEWEPWQFYSG 167
Query: 645 QCRRVYGRPNKATVTAANEQEARCSDTHRLAGDSAGXARLAFSTLEGRPA 794
CR YG ++A + NE A+C+ G +AFSTLEGRP+
Sbjct: 168 SCRATYGLSDRAPILPGNEATAQCTKEFSDISPITG-GNIAFSTLEGRPS 216
Score = 37.5 bits (83), Expect = 0.013
Identities = 14/23 (60%), Positives = 20/23 (86%), Gaps = 2/23 (8%)
Frame = +2
Query: 203 DPCYEES--RPRRCIPDFVNAAF 265
+PCY+ + +P+RC+PDFVNAAF
Sbjct: 23 NPCYDRATRQPQRCVPDFVNAAF 45
>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 53.6 bits (123), Expect = 2e-07
Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 4/134 (2%)
Frame = +3
Query: 339 QSPELACRVCDAARPDRRHPSLYLTDLNNPNNITCWRSAALMPASYDSPPDNVSLTLSLG 518
QSP+ C +CDA +RHP Y D W+S +L + + V++T+ L
Sbjct: 91 QSPQ--CDICDANNVHKRHPIEYAID----GTRRWWQSPSL---ANGLRFEKVNITIDLR 141
Query: 519 KKYELTYISLQFCPKSARPDSVAIYKSADYGLNWQPFQFYSSQ---CRRVYGRPNKATVT 689
++Y++ YI L+ S RP + + KS D G ++P+Q+Y+ Q C R +G P V
Sbjct: 142 QEYQVAYIILKM-GNSPRPGTWVLEKSLD-GEYYEPWQYYAMQDAECMRQFGIPATTGVP 199
Query: 690 A-ANEQEARCSDTH 728
E E C+ +
Sbjct: 200 RFQKEDEVHCTSEY 213
>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 53.6 bits (123), Expect = 2e-07
Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 4/134 (2%)
Frame = +3
Query: 339 QSPELACRVCDAARPDRRHPSLYLTDLNNPNNITCWRSAALMPASYDSPPDNVSLTLSLG 518
QSP+ C +CDA +RHP Y D W+S +L + + V++T+ L
Sbjct: 91 QSPQ--CDICDANNVHKRHPIEYAID----GTRRWWQSPSL---ANGLRFEKVNITIDLR 141
Query: 519 KKYELTYISLQFCPKSARPDSVAIYKSADYGLNWQPFQFYSSQ---CRRVYGRPNKATVT 689
++Y++ YI L+ S RP + + KS D G ++P+Q+Y+ Q C R +G P V
Sbjct: 142 QEYQVAYIILKM-GNSPRPGTWVLEKSLD-GEYYEPWQYYAMQDAECMRQFGIPATTGVP 199
Query: 690 A-ANEQEARCSDTH 728
E E C+ +
Sbjct: 200 RFQKEDEVHCTSEY 213
>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3102
Score = 53.6 bits (123), Expect = 2e-07
Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 4/134 (2%)
Frame = +3
Query: 339 QSPELACRVCDAARPDRRHPSLYLTDLNNPNNITCWRSAALMPASYDSPPDNVSLTLSLG 518
QSP+ C +CDA +RHP Y D W+S +L + + V++T+ L
Sbjct: 91 QSPQ--CDICDANNVHKRHPIEYAID----GTRRWWQSPSL---ANGLRFEKVNITIDLR 141
Query: 519 KKYELTYISLQFCPKSARPDSVAIYKSADYGLNWQPFQFYSSQ---CRRVYGRPNKATVT 689
++Y++ YI L+ S RP + + KS D G ++P+Q+Y+ Q C R +G P V
Sbjct: 142 QEYQVAYIILKM-GNSPRPGTWVLEKSLD-GEYYEPWQYYAMQDAECMRQFGIPATTGVP 199
Query: 690 A-ANEQEARCSDTH 728
E E C+ +
Sbjct: 200 RFQKEDEVHCTSEY 213
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical
protein K08C7.3b protein.
Length = 3672
Score = 46.8 bits (106), Expect = 2e-05
Identities = 34/146 (23%), Positives = 65/146 (44%)
Frame = +3
Query: 357 CRVCDAARPDRRHPSLYLTDLNNPNNITCWRSAALMPASYDSPPDNVSLTLSLGKKYELT 536
C C+A + HP+ + D NN + W S P S + V++T+ L +++ +
Sbjct: 101 CGHCNAGN-ENSHPAANMVDGNN----SWWMSP---PLSRGLQHNEVNITIDLEQEFHVA 152
Query: 537 YISLQFCPKSARPDSVAIYKSADYGLNWQPFQFYSSQCRRVYGRPNKATVTAANEQEARC 716
Y+ +Q S RP S + +S D+G +QP+ ++ R +++ +E ++
Sbjct: 153 YVWIQMA-NSPRPGSWVLERSTDHGKTYQPWFNFAENAAECMRRFGMESLSPISEDDSVT 211
Query: 717 SDTHRLAGDSAGXARLAFSTLEGRPA 794
T + A + LE RP+
Sbjct: 212 CRTDMASLQPLENAEMVIRILEHRPS 237
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical
protein K08C7.3a protein.
Length = 3704
Score = 46.8 bits (106), Expect = 2e-05
Identities = 34/146 (23%), Positives = 65/146 (44%)
Frame = +3
Query: 357 CRVCDAARPDRRHPSLYLTDLNNPNNITCWRSAALMPASYDSPPDNVSLTLSLGKKYELT 536
C C+A + HP+ + D NN + W S P S + V++T+ L +++ +
Sbjct: 101 CGHCNAGN-ENSHPAANMVDGNN----SWWMSP---PLSRGLQHNEVNITIDLEQEFHVA 152
Query: 537 YISLQFCPKSARPDSVAIYKSADYGLNWQPFQFYSSQCRRVYGRPNKATVTAANEQEARC 716
Y+ +Q S RP S + +S D+G +QP+ ++ R +++ +E ++
Sbjct: 153 YVWIQMA-NSPRPGSWVLERSTDHGKTYQPWFNFAENAAECMRRFGMESLSPISEDDSVT 211
Query: 717 SDTHRLAGDSAGXARLAFSTLEGRPA 794
T + A + LE RP+
Sbjct: 212 CRTDMASLQPLENAEMVIRILEHRPS 237
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 46.8 bits (106), Expect = 2e-05
Identities = 34/146 (23%), Positives = 65/146 (44%)
Frame = +3
Query: 357 CRVCDAARPDRRHPSLYLTDLNNPNNITCWRSAALMPASYDSPPDNVSLTLSLGKKYELT 536
C C+A + HP+ + D NN + W S P S + V++T+ L +++ +
Sbjct: 101 CGHCNAGN-ENSHPAANMVDGNN----SWWMSP---PLSRGLQHNEVNITIDLEQEFHVA 152
Query: 537 YISLQFCPKSARPDSVAIYKSADYGLNWQPFQFYSSQCRRVYGRPNKATVTAANEQEARC 716
Y+ +Q S RP S + +S D+G +QP+ ++ R +++ +E ++
Sbjct: 153 YVWIQMA-NSPRPGSWVLERSTDHGKTYQPWFNFAENAAECMRRFGMESLSPISEDDSVT 211
Query: 717 SDTHRLAGDSAGXARLAFSTLEGRPA 794
T + A + LE RP+
Sbjct: 212 CRTDMASLQPLENAEMVIRILEHRPS 237
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 46.8 bits (106), Expect = 2e-05
Identities = 34/146 (23%), Positives = 65/146 (44%)
Frame = +3
Query: 357 CRVCDAARPDRRHPSLYLTDLNNPNNITCWRSAALMPASYDSPPDNVSLTLSLGKKYELT 536
C C+A + HP+ + D NN + W S P S + V++T+ L +++ +
Sbjct: 101 CGHCNAGN-ENSHPAANMVDGNN----SWWMSP---PLSRGLQHNEVNITIDLEQEFHVA 152
Query: 537 YISLQFCPKSARPDSVAIYKSADYGLNWQPFQFYSSQCRRVYGRPNKATVTAANEQEARC 716
Y+ +Q S RP S + +S D+G +QP+ ++ R +++ +E ++
Sbjct: 153 YVWIQMA-NSPRPGSWVLERSTDHGKTYQPWFNFAENAAECMRRFGMESLSPISEDDSVT 211
Query: 717 SDTHRLAGDSAGXARLAFSTLEGRPA 794
T + A + LE RP+
Sbjct: 212 CRTDMASLQPLENAEMVIRILEHRPS 237
>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
see also lmb-protein 1 protein.
Length = 1067
Score = 45.6 bits (103), Expect = 5e-05
Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 1/124 (0%)
Frame = +3
Query: 282 ASSACGRRGPENLCDPPLDQSPELACRVCDAARPDRRHPSLYLTDLNNPNNIT-CWRSAA 458
A+S CG +G + C + C CD+ + Y N +T
Sbjct: 54 ATSTCGSQGRQRFCIVS-HLEEQTKCFYCDSRTEWKPQREPYRLSHRIENVVTEVMDDKN 112
Query: 459 LMPASYDSPPDNVSLTLSLGKKYELTYISLQFCPKSARPDSVAIYKSADYGLNWQPFQFY 638
++ NVS++ L ++ T++ + F KS RP ++ I +SAD+G WQ ++++
Sbjct: 113 RNWYQSENGAQNVSISFDLEAEFHFTHLIMTF--KSFRPAAMIIERSADFGKTWQVYRYF 170
Query: 639 SSQC 650
+ C
Sbjct: 171 AYDC 174
>U41993-7|AAA83450.2| 733|Caenorhabditis elegans Temporarily
assigned gene nameprotein 153, isoform b protein.
Length = 733
Score = 31.5 bits (68), Expect = 0.87
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +1
Query: 538 TSAYSSVRSLPDQTQWRSTRVQ-ITGSTGNLSSSTRVS 648
+SA SS S ++TQW++ R Q TG+ NLS +T+ S
Sbjct: 18 SSALSSSGSTHNETQWKNLRPQTATGADTNLSKNTKSS 55
>X64435-1|CAA45773.1| 318|Caenorhabditis elegans collagen protein.
Length = 318
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +3
Query: 282 ASSACGRRGPENLCDPPLDQSPELACRVCDAARPDRRHP 398
A+ G+ G + L D PLD P C +C A P R P
Sbjct: 117 ANGRPGKPGLDGL-DVPLDPEPAFPCVICPAGPPGTRGP 154
>U41624-3|AAF99944.1| 318|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 7 protein.
Length = 318
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +3
Query: 282 ASSACGRRGPENLCDPPLDQSPELACRVCDAARPDRRHP 398
A+ G+ G + L D PLD P C +C A P R P
Sbjct: 117 ANGRPGKPGLDGL-DVPLDPEPAFPCVICPAGPPGTRGP 154
>Z71262-1|CAA95813.1| 418|Caenorhabditis elegans Hypothetical
protein F22D6.1 protein.
Length = 418
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 458 SHACLVRLTSGQCVADPLPREEI*VDVHQPTVLSEVCP 571
SH +VR+ G+ + LP+ + VD H ++ E+CP
Sbjct: 190 SHPHIVRII-GKIIVKHLPKVGLAVDAHPLMIVMEMCP 226
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,191,426
Number of Sequences: 27780
Number of extensions: 352539
Number of successful extensions: 989
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2349764032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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