Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_I15
         (961 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homolog...    28   8.6  
AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin pro...    28   8.6  

>U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homology
           domain protein 1 protein.
          Length = 1346

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +2

Query: 509 KGRVAGVFSIGSAPLTSITKIDAQVRGGXTPPDXIYTIPXRXPPGKL 649
           +G   GV      P  S   +  +++GG  PP  +  IP   PPG L
Sbjct: 761 RGGPVGVGVPPPPPPPSAIPLPPRLQGGIPPPPPLGIIPPPPPPGNL 807


>AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin
           protein.
          Length = 1346

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +2

Query: 509 KGRVAGVFSIGSAPLTSITKIDAQVRGGXTPPDXIYTIPXRXPPGKL 649
           +G   GV      P  S   +  +++GG  PP  +  IP   PPG L
Sbjct: 761 RGGPVGVGVPPPPPPPSAIPLPPRLQGGIPPPPPLGIIPPPPPPGNL 807


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,703,452
Number of Sequences: 27780
Number of extensions: 333277
Number of successful extensions: 769
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2496624284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)