Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_I14
(977 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 33 0.23
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 33 0.23
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 33 0.23
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 31 1.6
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 1.6
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 1.6
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 31 1.6
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 30 2.9
U50310-5|AAA92541.1| 318|Caenorhabditis elegans Ground-like (gr... 30 2.9
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 30 2.9
U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical pr... 30 2.9
U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical pr... 30 2.9
U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set (trithorax/... 30 2.9
U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set (trithorax/... 30 2.9
U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (gr... 30 2.9
AL132898-14|CAC14406.1| 1641|Caenorhabditis elegans Hypothetical... 30 2.9
AF068713-14|AAK73895.1| 172|Caenorhabditis elegans Ground-like ... 30 2.9
AL110490-3|CAB54449.1| 892|Caenorhabditis elegans Hypothetical ... 29 6.7
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 23 9.1
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 33.5 bits (73), Expect = 0.23
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = -2
Query: 967 GGXXXXXPPXXXXXXXXXXXXPPPPXXXXXPPPPXPP 857
GG PP PPPP PPPP PP
Sbjct: 740 GGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPP 776
Score = 29.9 bits (64), Expect = 2.9
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -3
Query: 903 PPPPXXXXXPPPPXPP 856
PPPP PPPP PP
Sbjct: 762 PPPPGGCPPPPPPPPP 777
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 33.5 bits (73), Expect = 0.23
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = -2
Query: 967 GGXXXXXPPXXXXXXXXXXXXPPPPXXXXXPPPPXPP 857
GG PP PPPP PPPP PP
Sbjct: 740 GGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPP 776
Score = 29.9 bits (64), Expect = 2.9
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -3
Query: 903 PPPPXXXXXPPPPXPP 856
PPPP PPPP PP
Sbjct: 762 PPPPGGCPPPPPPPPP 777
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 33.5 bits (73), Expect = 0.23
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = -2
Query: 967 GGXXXXXPPXXXXXXXXXXXXPPPPXXXXXPPPPXPP 857
GG PP PPPP PPPP PP
Sbjct: 323 GGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPP 359
Score = 29.9 bits (64), Expect = 2.9
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -3
Query: 903 PPPPXXXXXPPPPXPP 856
PPPP PPPP PP
Sbjct: 345 PPPPGGCPPPPPPPPP 360
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/40 (40%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Frame = +3
Query: 858 GGXGGGGXXXXXGGG-GXXXXXXXXXXXXGGXXXXXPPPP 974
GG GGGG GGG G GG PPPP
Sbjct: 77 GGCGGGGGCGGGGGGCGGGGGGCGGGGGCGGGCAPPPPPP 116
Score = 29.9 bits (64), Expect = 2.9
Identities = 16/39 (41%), Positives = 16/39 (41%)
Frame = +3
Query: 858 GGXGGGGXXXXXGGGGXXXXXXXXXXXXGGXXXXXPPPP 974
GG GGGG GGGG GG PPPP
Sbjct: 25 GGGGGGGCGGGCGGGGGCGGGGGC----GGGCAPPPPPP 59
Score = 28.3 bits (60), Expect = 8.8
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = +3
Query: 858 GGXGGGGXXXXXGGGGXXXXXXXXXXXXGGXXXXXPPPP 974
GG G GG GGGG GG PPP
Sbjct: 75 GGGGCGGGGGCGGGGGGCGGGGGGCGGGGGCGGGCAPPP 113
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 30.7 bits (66), Expect = 1.6
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = -2
Query: 946 PPXXXXXXXXXXXXPPPPXXXXXPPPPXPP 857
PP PPPP PPPP PP
Sbjct: 274 PPPMPPTPGMTPRPPPPPSSGMWPPPPPPP 303
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 30.7 bits (66), Expect = 1.6
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = -2
Query: 946 PPXXXXXXXXXXXXPPPPXXXXXPPPPXPP 857
PP PPPP PPPP PP
Sbjct: 284 PPPMPPTPGMTPRPPPPPSSGMWPPPPPPP 313
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 30.7 bits (66), Expect = 1.6
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = -2
Query: 946 PPXXXXXXXXXXXXPPPPXXXXXPPPPXPP 857
PP PPPP PPPP PP
Sbjct: 566 PPLPQNLSGAPPPPPPPPPMLGGPPPPPPP 595
Score = 29.9 bits (64), Expect = 2.9
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -3
Query: 903 PPPPXXXXXPPPPXPP 856
PPPP PPPP PP
Sbjct: 581 PPPPMLGGPPPPPPPP 596
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 29.9 bits (64), Expect = 2.9
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -2
Query: 904 PPPPXXXXXPPPPXPP 857
PPPP PPPP PP
Sbjct: 105 PPPPPMFGAPPPPPPP 120
>U50310-5|AAA92541.1| 318|Caenorhabditis elegans Ground-like (grd
related) protein 9 protein.
Length = 318
Score = 29.9 bits (64), Expect = 2.9
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -2
Query: 904 PPPPXXXXXPPPPXPP 857
PPPP PPPP PP
Sbjct: 134 PPPPPSPPPPPPPPPP 149
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 29.9 bits (64), Expect = 2.9
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -3
Query: 903 PPPPXXXXXPPPPXPP 856
PPPP PPPP PP
Sbjct: 57 PPPPMCPPPPPPPPPP 72
>U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical
protein R144.4a protein.
Length = 360
Score = 29.9 bits (64), Expect = 2.9
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -3
Query: 903 PPPPXXXXXPPPPXPP 856
PPPP PPPP PP
Sbjct: 2 PPPPPPPPPPPPPPPP 17
>U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical
protein R144.4b protein.
Length = 362
Score = 29.9 bits (64), Expect = 2.9
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -3
Query: 903 PPPPXXXXXPPPPXPP 856
PPPP PPPP PP
Sbjct: 2 PPPPPPPPPPPPPPPP 17
>U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 2, isoform
c protein.
Length = 1510
Score = 29.9 bits (64), Expect = 2.9
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -3
Query: 903 PPPPXXXXXPPPPXPP 856
PPPP PPPP PP
Sbjct: 298 PPPPIKEESPPPPPPP 313
>U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 2, isoform
a protein.
Length = 1507
Score = 29.9 bits (64), Expect = 2.9
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -3
Query: 903 PPPPXXXXXPPPPXPP 856
PPPP PPPP PP
Sbjct: 298 PPPPIKEESPPPPPPP 313
>U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (grd
related) protein22 protein.
Length = 162
Score = 29.9 bits (64), Expect = 2.9
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -2
Query: 904 PPPPXXXXXPPPPXPP 857
PPPP PPPP PP
Sbjct: 42 PPPPMCGCAPPPPPPP 57
>AL132898-14|CAC14406.1| 1641|Caenorhabditis elegans Hypothetical
protein Y59A8B.1a protein.
Length = 1641
Score = 29.9 bits (64), Expect = 2.9
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -2
Query: 904 PPPPXXXXXPPPPXPP 857
PPPP PPPP PP
Sbjct: 784 PPPPRASEPPPPPPPP 799
>AF068713-14|AAK73895.1| 172|Caenorhabditis elegans Ground-like
(grd related) protein29 protein.
Length = 172
Score = 29.9 bits (64), Expect = 2.9
Identities = 16/41 (39%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Frame = +3
Query: 858 GGXGGGGXXXXXGG--GGXXXXXXXXXXXXGGXXXXXPPPP 974
GG GGGG GG GG GG PPPP
Sbjct: 29 GGCGGGGGCGGGGGCGGGCGYGGGGGCGYGGGYGCGIPPPP 69
>AL110490-3|CAB54449.1| 892|Caenorhabditis elegans Hypothetical
protein Y48B6A.3 protein.
Length = 892
Score = 28.7 bits (61), Expect = 6.7
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = +3
Query: 858 GGXGGGGXXXXXGGGGXXXXXXXXXXXXGGXXXXXPPP 971
GG GGGG GGGG GG PP
Sbjct: 833 GGYGGGGGGGGGGGGGSYHQPYNQDQRRGGRGGGGGPP 870
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 23.4 bits (48), Expect(2) = 9.1
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = -2
Query: 742 GXXXXXPPPPXGGXXKKKXXXKXFXGGGGG 653
G PPPP GG F GG GG
Sbjct: 765 GPMSSFPPPPRGGMHHMPPPPS-FRGGRGG 793
Score = 23.0 bits (47), Expect(2) = 9.1
Identities = 8/16 (50%), Positives = 8/16 (50%)
Frame = -2
Query: 904 PPPPXXXXXPPPPXPP 857
PPPP PP PP
Sbjct: 719 PPPPGVGPPPPQGIPP 734
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,798,112
Number of Sequences: 27780
Number of extensions: 288808
Number of successful extensions: 3528
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1381
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2542323834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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