Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_I13
         (903 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0963 - 12769715-12769859,12770639-12770889                       88   8e-18
07_03_1662 + 28447419-28447666,28448429-28448573                       86   4e-17
03_05_0100 - 20779387-20779641,20779824-20780629,20780757-207810...    30   2.9  
09_02_0195 + 5643549-5645090                                           29   6.7  

>03_02_0963 - 12769715-12769859,12770639-12770889
          Length = 131

 Score = 88.2 bits (209), Expect = 8e-18
 Identities = 44/100 (44%), Positives = 58/100 (58%), Gaps = 3/100 (3%)
 Frame = +3

Query: 213 NLKFTIDCTHPAEDSILDVGNFEKYLKEHVKVE-GKTNNLSNHVVVARDKTKVAITADIP 389
           ++ F IDC  P +D I+++ + EK+L+E +KV  GK  NL   V V+RDKTKV +T+D P
Sbjct: 21  SVTFVIDCAKPVDDKIMEIASLEKFLQERIKVAGGKAGNLGESVTVSRDKTKVTVTSDGP 80

Query: 390 FSXXXXXXXXXXXXXXXXXXDWLRVVASAHD--AYELRYF 503
           FS                  DWLRV+AS  D   YELRYF
Sbjct: 81  FSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYF 120


>07_03_1662 + 28447419-28447666,28448429-28448573
          Length = 130

 Score = 85.8 bits (203), Expect = 4e-17
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 3/100 (3%)
 Frame = +3

Query: 213 NLKFTIDCTHPAEDSILDVGNFEKYLKEHVKVE-GKTNNLSNHVVVARDKTKVAITADIP 389
           ++ F IDC+ P ED I+++ + EK+L+E +KV  GK  NL + V V RDKTKV +T+D  
Sbjct: 20  SVSFVIDCSKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSVTVTRDKTKVTVTSDGA 79

Query: 390 FSXXXXXXXXXXXXXXXXXXDWLRVVASAHD--AYELRYF 503
           FS                  DWLRV+A+  D   YELRYF
Sbjct: 80  FSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYF 119


>03_05_0100 -
           20779387-20779641,20779824-20780629,20780757-20781011,
           20781107-20781221,20781301-20781353,20781517-20781777,
           20782804-20782854,20783081-20783329,20784765-20784990,
           20785968-20786132
          Length = 811

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = -3

Query: 103 IVANEHV*SSYRKNCKNGPKILRIPYS 23
           I+ N ++ S  RKNC+NG K+L IP S
Sbjct: 775 IIVN-YIYSFLRKNCRNGEKMLSIPRS 800


>09_02_0195 + 5643549-5645090
          Length = 513

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 184 ILPPFTPFLPVFWCNWAFLA 125
           ILPP  P LP+ W +W  LA
Sbjct: 152 ILPPSNPTLPMQWIDWEALA 171


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,066,688
Number of Sequences: 37544
Number of extensions: 288963
Number of successful extensions: 627
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)