Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_I12
         (896 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    29   0.90 
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    27   4.8  
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2...    27   4.8  

>SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 277

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
 Frame = +1

Query: 433 VKITSTHSTLHHLIPTVCIQEHNLGNIVDQLCTSLQDIKDHEDSV--IGMPTCSIEQAEA 606
           +K+T+ H T   ++  V   EHNL   ++Q+   +    D  +    +G    ++ +A+ 
Sbjct: 134 LKVTNNHITHATIVGQVSGSEHNLSTAIEQVDVIVNYFYDSSEKFLELGNKVQTLGKAKN 193

Query: 607 VRQYYAAFPALKKGQVSPLQYYL 675
            + +   + +  K  V  +Q  L
Sbjct: 194 KKHWLGVYQSFGKASVDQIQKQL 216


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +1

Query: 460  LHHLIPTVCIQEHNLGNIVDQLCTSLQDIKDHEDSVIGMPTCSIEQA 600
            L+ LI  + I +HN  N    L  ++ + K H   ++G+    +++A
Sbjct: 2380 LYSLIRLIFISQHNGKNPYYDLIVNISENKQHRADIVGLLLYILQEA 2426


>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = +1

Query: 589 IEQAEAVRQYYAAFPALKKGQVSPL--QYYLPPLLGVVRLSLKSQPKCNANCLRPRIGX* 762
           ++   AV  Y   F +   GQ+  +  +Y LPPLL    +   +    N    R R+G  
Sbjct: 355 VDDPVAVASYILQFLSRVPGQLERMFQRYELPPLLNTSDIDTATDFLVNIARKRGRLGRG 414

Query: 763 GIXSL 777
           GI +L
Sbjct: 415 GIPNL 419


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,406,791
Number of Sequences: 5004
Number of extensions: 68499
Number of successful extensions: 139
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)