Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_I12
         (896 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         25   4.1  
AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA topoi...    25   4.1  
AY391745-1|AAR28995.1|  460|Anopheles gambiae putative GPCR prot...    24   5.5  

>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 6/20 (30%), Positives = 15/20 (75%)
 Frame = -1

Query: 98  ISCYIKYTHTPTMKKKKKIL 39
           ++C++KYT T  ++ +K ++
Sbjct: 930 VNCFVKYTFTKVLRLQKSLM 949


>AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA
            topoisomerase protein.
          Length = 1039

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +3

Query: 447  NTLHTSSSDTYSLHSGTQFRKHC*SAVY*SPGHKRSR 557
            NT  +SSS   S HSGT   K   +    SPG K+ R
Sbjct: 966  NTNSSSSSGKKSSHSGTNSSKRKKTV---SPGEKKDR 999


>AY391745-1|AAR28995.1|  460|Anopheles gambiae putative GPCR
           protein.
          Length = 460

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +3

Query: 540 GHKRSRRFCHRYANVFYRTSRGCTSILRCISSSEERASV 656
           GH         Y  +F+ T+ G   IL CIS    R +V
Sbjct: 350 GHSYLTILVQYYCYLFFITNFGINFILYCISGQNFRKAV 388


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 887,642
Number of Sequences: 2352
Number of extensions: 17827
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 96747534
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)