Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_I10
(972 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 33 0.080
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 30 0.43
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 29 1.3
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 2.3
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 4.0
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 9.2
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 32.7 bits (71), Expect = 0.080
Identities = 18/65 (27%), Positives = 21/65 (32%)
Frame = +1
Query: 640 PXXPAQXXPXXPXPXXXXXXPXPKNXXPIXSXPXPPXXXPXPXXTXPXTKTPTTXKQXXP 819
P A P P P P P PI S PP P + P + + P
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMP 198
Query: 820 PLHPP 834
P PP
Sbjct: 199 PKVPP 203
Score = 26.2 bits (55), Expect = 7.0
Identities = 17/66 (25%), Positives = 19/66 (28%), Gaps = 1/66 (1%)
Frame = +1
Query: 640 PXXPAQXXPXXPXPXXXXXXPXPKNXXPIXSXPXPPXXXPXPXXTXPXTKTPTTXKQXXP 819
P P+ P P P P P PP P P P T + P
Sbjct: 165 PPIPSSLPPPAQ-PAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQAPVANTSSRPSSFAP 223
Query: 820 PL-HPP 834
P H P
Sbjct: 224 PAGHAP 229
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 30.3 bits (65), Expect = 0.43
Identities = 27/116 (23%), Positives = 33/116 (28%), Gaps = 9/116 (7%)
Frame = +3
Query: 354 PPPPXKKXKKXXARXPPXXXXTRPP-------SXXXQXHXRNNHKPXXXXP-PPPXXRGX 509
PPPP + PP PP S Q ++ + P PPP G
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGR 398
Query: 510 XXXXXXXXXDX-QXXPPXXKHPKKXPPPXXPQXXXRXPXXXPXGAXXXRPXXPXXP 674
+ + P P PP P P P GA P P P
Sbjct: 399 SAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAP 454
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 28.7 bits (61), Expect = 1.3
Identities = 27/138 (19%), Positives = 32/138 (23%), Gaps = 5/138 (3%)
Frame = +1
Query: 349 GXHXPPXKKXKKXXPXXPPXXXXHDPPAXRXRXMXEXXXXXXXXXHPXXKXGEXH---TP 519
G H PP K PP H+P P H P
Sbjct: 204 GEHMPPPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 263
Query: 520 XHXKTXTHNXXPPXENTXXXXXXXXXXXXXTGXRXPXQXXPXXPAQXXPXXP--XPXXXX 693
H + H PP + G P P + P P
Sbjct: 264 MHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEH 323
Query: 694 XXPXPKNXXPIXSXPXPP 747
P P + P P PP
Sbjct: 324 MPPPPMHHEPGEHMPPPP 341
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.9 bits (59), Expect = 2.3
Identities = 13/48 (27%), Positives = 14/48 (29%)
Frame = +2
Query: 650 PPKXXPPPPPPXPXXGXPXXKTXXQSXAXPXXXXXPPXRXXPPXXPKP 793
PP+ P PPP P P P P P P P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.1 bits (57), Expect = 4.0
Identities = 15/57 (26%), Positives = 15/57 (26%)
Frame = +1
Query: 649 PAQXXPXXPXPXXXXXXPXPKNXXPIXSXPXPPXXXPXPXXTXPXTKTPTTXKQXXP 819
PA P P P P P P P P P P PT P
Sbjct: 1184 PAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVP 1240
Score = 26.2 bits (55), Expect = 7.0
Identities = 17/71 (23%), Positives = 20/71 (28%), Gaps = 1/71 (1%)
Frame = +1
Query: 625 PXQXXPXXPAQXXPXXPX-PXXXXXXPXPKNXXPIXSXPXPPXXXPXPXXTXPXTKTPTT 801
P P P P P P P P P P P T P K+ +
Sbjct: 999 PVSTSPAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSG 1058
Query: 802 XKQXXPPLHPP 834
PP+ P
Sbjct: 1059 APSAPPPVPAP 1069
Score = 25.8 bits (54), Expect = 9.2
Identities = 16/70 (22%), Positives = 20/70 (28%)
Frame = +1
Query: 625 PXQXXPXXPAQXXPXXPXPXXXXXXPXPKNXXPIXSXPXPPXXXPXPXXTXPXTKTPTTX 804
P P P P P P PK + P P P P + P
Sbjct: 1174 PSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPT 1233
Query: 805 KQXXPPLHPP 834
+ PP+ P
Sbjct: 1234 AK-APPVPAP 1242
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.8 bits (54), Expect = 9.2
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +2
Query: 653 PKXXPPPPPPXPXXGXP 703
P PPPPPP P P
Sbjct: 5 PPGNPPPPPPPPGFEPP 21
Score = 25.8 bits (54), Expect = 9.2
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +2
Query: 650 PPKXXPPPPPP 682
PP PPPPPP
Sbjct: 20 PPSQPPPPPPP 30
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,413,699
Number of Sequences: 5004
Number of extensions: 14419
Number of successful extensions: 158
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 499296500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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