Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_I09
         (850 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    33   0.068
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.83 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   2.5  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    27   3.4  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.4  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   7.8  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 32.7 bits (71), Expect = 0.068
 Identities = 16/51 (31%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
 Frame = +2

Query: 539 PPSKXXXXGGXXXP-KXXXPPPPPPXXXKXXXGXXPPPXXXXGGGGGPPXP 688
           PP +    G    P +    PPPPP       G  PPP         PP P
Sbjct: 341 PPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAP 391



 Score = 26.2 bits (55), Expect = 5.9
 Identities = 15/50 (30%), Positives = 15/50 (30%)
 Frame = +2

Query: 539 PPSKXXXXGGXXXPKXXXPPPPPPXXXKXXXGXXPPPXXXXGGGGGPPXP 688
           PPS           K   PPPPPP          PP          PP P
Sbjct: 294 PPSSRVSAAALAANKKRPPPPPPPSRRNR---GKPPIGNGSSNSSLPPPP 340



 Score = 26.2 bits (55), Expect = 5.9
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +1

Query: 592 PPPPPPPXXKXXXGXXXPP 648
           PPPPPPP          PP
Sbjct: 337 PPPPPPPRSNAAGSIPLPP 355


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.1 bits (62), Expect = 0.83
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +1

Query: 577 PXKXXPPPPPPPXXKXXXGXXXPP 648
           P    PPPPPPP      G   PP
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/37 (35%), Positives = 13/37 (35%)
 Frame = +2

Query: 578 PKXXXPPPPPPXXXKXXXGXXPPPXXXXGGGGGPPXP 688
           P     P P P       G  PPP      G GPP P
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = +2

Query: 596 PPPPPXXXKXXXGXXPPPXXXXGGGGGPPXP 688
           P PPP          PPP    G G  PP P
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 27.9 bits (59), Expect = 1.9
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = +2

Query: 593 PPPPPPXXXKXXXGXXPPPXXXXGGGG 673
           PPPPPP          PPP      GG
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = +2

Query: 593 PPPPPPXXXKXXXGXXPPPXXXXGGGGGPPXP 688
           P P PP          PPP     G G PP P
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 27.1 bits (57), Expect = 3.4
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = +2

Query: 593 PPPPPPXXXKXXXGXXPPPXXXXGGGGG 676
           PPPPPP          PPP       GG
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPPAVSAGG 789


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 15/42 (35%), Positives = 15/42 (35%)
 Frame = -2

Query: 687 GXGGPPPPPXXXXGGGXXPXXXFXXXGGGGGGXXLXGXXXPP 562
           G GGPPP P    G G          G GG G    G    P
Sbjct: 196 GSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGP 237


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +2

Query: 599 PPPPXXXKXXXGXXPPPXXXXGGGGGPPXP 688
           PPPP   K      PPP     G   PP P
Sbjct: 208 PPPPMHHKPGEHMPPPPMHHEPGEHMPPPP 237


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +2

Query: 578 PKXXXPPPPPPXXXKXXXGXXPPP 649
           P    PPPPPP   +      PPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPP 28



 Score = 25.8 bits (54), Expect = 7.8
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = +2

Query: 578 PKXXXPPPPPPXXXKXXXGXXPPP 649
           P    PPPPPP          PPP
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPP 29


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = +1

Query: 577  PXKXXPPPPPPPXXKXXXGXXXPP 648
            P    PPPPPPP      G    P
Sbjct: 942  PAFPPPPPPPPPLVSAAGGKFVSP 965


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,893,973
Number of Sequences: 5004
Number of extensions: 25510
Number of successful extensions: 235
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)