Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_I05
         (891 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   2.7  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   4.7  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   8.3  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 17/64 (26%), Positives = 19/64 (29%), Gaps = 5/64 (7%)
 Frame = +1

Query: 613 PPPXXXXKXKPPPGGGXAXLXTPXKSXXXXGRGGPXXXXXXXXNLVVPLPPPXXXP---- 780
           PPP    + KPP G G +    P                        P PPP   P    
Sbjct: 315 PPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGR 374

Query: 781 -PPP 789
            PPP
Sbjct: 375 QPPP 378


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 17/49 (34%), Positives = 18/49 (36%)
 Frame = -1

Query: 669 GGXXXPXGGFXFXXXGWGGGXXKKXXGXXGXQKPPGQXXGXXPXXXXGP 523
           GG     GGF     G+GGG      G  G    PG   G  P    GP
Sbjct: 224 GGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPG-GFGGGPGGHGGP 271


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 18/71 (25%), Positives = 20/71 (28%), Gaps = 1/71 (1%)
 Frame = +1

Query: 580  PPXPXPF-FXXXPPPXXXXKXKPPPGGGXAXLXTPXKSXXXXGRGGPXXXXXXXXNLVVP 756
            PP P P      P P       P P  G   +  P                      V P
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPP 1209

Query: 757  LPPPXXXPPPP 789
            +PPP   PP P
Sbjct: 1210 VPPPSTAPPVP 1220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,979,385
Number of Sequences: 5004
Number of extensions: 24635
Number of successful extensions: 50
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)