Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_I03
         (954 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.73 
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac...    28   2.2  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    27   2.9  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.9  
SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy...    26   9.0  
SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyce...    26   9.0  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    23   9.5  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.5 bits (63), Expect = 0.73
 Identities = 14/32 (43%), Positives = 14/32 (43%)
 Frame = +1

Query: 712 GFXFXFXGXXGGGXGGFFXAXXKPXPXPGXRG 807
           G  F   G  GGG GGF      P P PG  G
Sbjct: 177 GNLFHHRGHNGGGFGGFGGGSGGPPPGPGGFG 208


>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
           Vps23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 487

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +1

Query: 145 VHAFVKRDAPKEDNSLNTLAESAKKTIEELREKVESALAPETVKKNFGT 291
           V A +K+D  +E  S   L      TIE+L+ K E+   P    K F +
Sbjct: 128 VQALIKQDFEREHTSPPELPTKLVNTIEKLKVKEENEAPPVIPAKPFSS 176


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 15/57 (26%), Positives = 29/57 (50%)
 Frame = -2

Query: 263 GAKADSTFSLNSSIVFFALSASVFRLLSSLGASRLTNACTLARQIANKIISSLFILD 93
           G  A + F ++ SIV+ A+ ++V   +  + A           ++ NK+ S L++LD
Sbjct: 410 GYMAITKFEVSQSIVYSAIVSAVAEFIRQILAEDQLLLNNFFEELKNKLESDLYLLD 466


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 765 KKXPPXPPPXPGKXKXKPXXG 703
           KK PP PPP   + + KP  G
Sbjct: 308 KKRPPPPPPPSRRNRGKPPIG 328


>SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -2

Query: 233 NSSIVFFALSASVFRLLSSLGASRLTNACTLARQIANKIISSL 105
           N S+  F L A+       +  S  +N C LA+++   ++SSL
Sbjct: 121 NPSLCSFTLPATWSEPPLQISLSTSSNGCRLAQRLLRHVVSSL 163


>SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 292

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 279 KLWHDGRQLQRIL*KSEARGSTESL-RSNFLVSKYITPN 392
           K W DGR+  RIL ++E R S  ++ RSN    +Y   N
Sbjct: 216 KKWSDGRR-DRILKQAEERRSNRAVGRSNLSGREYFESN 253


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 22.6 bits (46), Expect(2) = 9.5
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -1

Query: 756 PPXPPPXPG 730
           PP PPP PG
Sbjct: 9   PPPPPPPPG 17



 Score = 21.0 bits (42), Expect(2) = 9.5
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -1

Query: 753 PXPPPXPGKXKXK 715
           P PPP PG  K +
Sbjct: 24  PPPPPPPGYVKKR 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,538,286
Number of Sequences: 5004
Number of extensions: 40069
Number of successful extensions: 152
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 487313384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)