Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_I03
         (954 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC141917-1|AAI41918.1|  198|Homo sapiens PRB1 protein protein.         31   8.2  

>BC141917-1|AAI41918.1|  198|Homo sapiens PRB1 protein protein.
          Length = 198

 Score = 30.7 bits (66), Expect = 8.2
 Identities = 26/92 (28%), Positives = 30/92 (32%), Gaps = 13/92 (14%)
 Frame = -2

Query: 947 PGXPPXXGXXXXPPLXXXKXXPPXXXPGXXXXX---GG---GXXEEGAPKXKTPLXPGX- 789
           P  PP  G    PP    K   P   PG        GG   G   +G  K + PL PG  
Sbjct: 68  PQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGKPQGPPPQGGNKPQGPLPPGKP 127

Query: 788 ------GXGXXXAXKXPPXPPPXXPXXXKXNP 711
                 G     + + PP  P   P     NP
Sbjct: 128 QGPPAQGGSKSQSARAPPGKPQGPPQQEGNNP 159


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,359,281
Number of Sequences: 237096
Number of extensions: 1928371
Number of successful extensions: 5644
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 3930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5287
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12603135794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)