Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_I03
(954 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 34 0.17
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 34 0.17
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 34 0.17
Z30317-2|CAA82968.2| 1142|Caenorhabditis elegans Hypothetical pr... 32 0.70
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 31 1.2
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 31 1.2
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 31 1.2
U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protei... 31 1.6
AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen prot... 31 1.6
Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical pr... 30 2.8
Z67995-6|CAA91946.1| 2692|Caenorhabditis elegans Hypothetical pr... 29 6.5
Z67737-7|CAA91543.1| 2692|Caenorhabditis elegans Hypothetical pr... 29 6.5
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 28 8.6
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 28 8.6
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 33.9 bits (74), Expect = 0.17
Identities = 23/78 (29%), Positives = 25/78 (32%)
Frame = -2
Query: 944 GXPPXXGXXXXPPLXXXKXXPPXXXPGXXXXXGGGXXEEGAPKXKTPLXPGXGXGXXXAX 765
G PP G PP+ PP PG GG P P+ G
Sbjct: 712 GPPPPPGL---PPITGGPPPPPP--PGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPG 766
Query: 764 KXPPXPPPXXPXXXKXNP 711
PP PPP P K P
Sbjct: 767 GCPPPPPPPPPGGFKGGP 784
Score = 28.7 bits (61), Expect = 6.5
Identities = 22/74 (29%), Positives = 22/74 (29%), Gaps = 6/74 (8%)
Frame = -2
Query: 947 PGXPPXXGXXXXPP----LXXXKXXPPXXXP--GXXXXXGGGXXEEGAPKXKTPLXPGXG 786
PG PP G PP L PP P G GG P P P
Sbjct: 717 PGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPP 776
Query: 785 XGXXXAXKXPPXPP 744
G PP PP
Sbjct: 777 PGGFKGGPPPPPPP 790
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 33.9 bits (74), Expect = 0.17
Identities = 23/78 (29%), Positives = 25/78 (32%)
Frame = -2
Query: 944 GXPPXXGXXXXPPLXXXKXXPPXXXPGXXXXXGGGXXEEGAPKXKTPLXPGXGXGXXXAX 765
G PP G PP+ PP PG GG P P+ G
Sbjct: 712 GPPPPPGL---PPITGGPPPPPP--PGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPG 766
Query: 764 KXPPXPPPXXPXXXKXNP 711
PP PPP P K P
Sbjct: 767 GCPPPPPPPPPGGFKGGP 784
Score = 28.7 bits (61), Expect = 6.5
Identities = 22/74 (29%), Positives = 22/74 (29%), Gaps = 6/74 (8%)
Frame = -2
Query: 947 PGXPPXXGXXXXPP----LXXXKXXPPXXXP--GXXXXXGGGXXEEGAPKXKTPLXPGXG 786
PG PP G PP L PP P G GG P P P
Sbjct: 717 PGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPP 776
Query: 785 XGXXXAXKXPPXPP 744
G PP PP
Sbjct: 777 PGGFKGGPPPPPPP 790
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 33.9 bits (74), Expect = 0.17
Identities = 23/78 (29%), Positives = 25/78 (32%)
Frame = -2
Query: 944 GXPPXXGXXXXPPLXXXKXXPPXXXPGXXXXXGGGXXEEGAPKXKTPLXPGXGXGXXXAX 765
G PP G PP+ PP PG GG P P+ G
Sbjct: 295 GPPPPPGL---PPITGGPPPPPP--PGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPG 349
Query: 764 KXPPXPPPXXPXXXKXNP 711
PP PPP P K P
Sbjct: 350 GCPPPPPPPPPGGFKGGP 367
Score = 28.7 bits (61), Expect = 6.5
Identities = 22/74 (29%), Positives = 22/74 (29%), Gaps = 6/74 (8%)
Frame = -2
Query: 947 PGXPPXXGXXXXPP----LXXXKXXPPXXXP--GXXXXXGGGXXEEGAPKXKTPLXPGXG 786
PG PP G PP L PP P G GG P P P
Sbjct: 300 PGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPP 359
Query: 785 XGXXXAXKXPPXPP 744
G PP PP
Sbjct: 360 PGGFKGGPPPPPPP 373
>Z30317-2|CAA82968.2| 1142|Caenorhabditis elegans Hypothetical protein
T16G12.5 protein.
Length = 1142
Score = 31.9 bits (69), Expect = 0.70
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Frame = +1
Query: 172 PKEDNSLNTLAESAKKTIEELREKVESALAP----ETVKKNFGTMVDSFNEFYKNLKPAE 339
P ED S N + AKK + +L+ V AP T ++ + VD NE+ + L E
Sbjct: 834 PSEDVSFNLAVDEAKKLLRDLKIDVNQVNAPTLPQRTDRQRYNQQVDVCNEWIEELHDDE 893
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 31.1 bits (67), Expect = 1.2
Identities = 23/72 (31%), Positives = 23/72 (31%), Gaps = 4/72 (5%)
Frame = -2
Query: 947 PGXPPXXGXXXXPPLXXXKXXP-PXXXPGXXXXXG--GGXXEEGAPKXKTPLXPG-XGXG 780
PG P G P P P PG G G E G P PL PG G
Sbjct: 164 PGDPGEAGTPGRPGTDAAPGSPGPRGPPGPAGEAGAPGPAGEPGTPAISEPLTPGAPGEP 223
Query: 779 XXXAXKXPPXPP 744
PP PP
Sbjct: 224 GDSGPPGPPGPP 235
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 31.1 bits (67), Expect = 1.2
Identities = 23/72 (31%), Positives = 23/72 (31%), Gaps = 4/72 (5%)
Frame = -2
Query: 947 PGXPPXXGXXXXPPLXXXKXXP-PXXXPGXXXXXG--GGXXEEGAPKXKTPLXPG-XGXG 780
PG P G P P P PG G G E G P PL PG G
Sbjct: 159 PGDPGEAGTPGRPGTDAAPGSPGPRGPPGPAGEAGAPGPAGEPGTPAISEPLTPGAPGEP 218
Query: 779 XXXAXKXPPXPP 744
PP PP
Sbjct: 219 GDSGPPGPPGPP 230
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 31.1 bits (67), Expect = 1.2
Identities = 23/72 (31%), Positives = 23/72 (31%), Gaps = 4/72 (5%)
Frame = -2
Query: 947 PGXPPXXGXXXXPPLXXXKXXP-PXXXPGXXXXXG--GGXXEEGAPKXKTPLXPG-XGXG 780
PG P G P P P PG G G E G P PL PG G
Sbjct: 159 PGDPGEAGTPGRPGTDAAPGSPGPRGPPGPAGEAGAPGPAGEPGTPAISEPLTPGAPGEP 218
Query: 779 XXXAXKXPPXPP 744
PP PP
Sbjct: 219 GDSGPPGPPGPP 230
>U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protein
43 protein.
Length = 303
Score = 30.7 bits (66), Expect = 1.6
Identities = 22/72 (30%), Positives = 23/72 (31%), Gaps = 4/72 (5%)
Frame = -2
Query: 947 PGXPPXXGXXXXPPLXXXKXXP-PXXXPGXXXXXG--GGXXEEGAPKXKTPLXPG-XGXG 780
PG P G P P P PG G G + G P PL PG G
Sbjct: 166 PGDPGEAGTPGRPGTDATPGLPGPRGPPGPPGEAGQPGPQGDAGTPAQSEPLTPGAPGEA 225
Query: 779 XXXAXKXPPXPP 744
PP PP
Sbjct: 226 GDAGPAGPPGPP 237
>AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen
protein.
Length = 303
Score = 30.7 bits (66), Expect = 1.6
Identities = 22/72 (30%), Positives = 23/72 (31%), Gaps = 4/72 (5%)
Frame = -2
Query: 947 PGXPPXXGXXXXPPLXXXKXXP-PXXXPGXXXXXG--GGXXEEGAPKXKTPLXPG-XGXG 780
PG P G P P P PG G G + G P PL PG G
Sbjct: 166 PGDPGEAGTPGRPGTDATPGLPGPRGPPGPPGEAGQPGPQGDAGTPAQSEPLTPGAPGEA 225
Query: 779 XXXAXKXPPXPP 744
PP PP
Sbjct: 226 GDAGPAGPPGPP 237
>Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical
protein T05A1.2 protein.
Length = 300
Score = 29.9 bits (64), Expect = 2.8
Identities = 19/79 (24%), Positives = 21/79 (26%)
Frame = -2
Query: 947 PGXPPXXGXXXXPPLXXXKXXPPXXXPGXXXXXGGGXXEEGAPKXKTPLXPGXGXGXXXA 768
PG P G PP + P P G G P + P P G
Sbjct: 121 PGAPGAPGHPGKPPQSPCEPLTPPPCPACPPGPPGAPGAPGKPGSEGPPGPPGHDGPNGG 180
Query: 767 XKXPPXPPPXXPXXXKXNP 711
P P P P P
Sbjct: 181 PGQPGQPGPHGPNGHPGKP 199
>Z67995-6|CAA91946.1| 2692|Caenorhabditis elegans Hypothetical
protein T01H10.8 protein.
Length = 2692
Score = 28.7 bits (61), Expect = 6.5
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +1
Query: 178 EDNSLNTLAESAKKTIEELREKVESALAPETVKKNFGTMVDSFNEFYKNLKPAEAPK 348
E++S L K TI + L + K FG ++D FN + NL+ ++ K
Sbjct: 125 EEDSQILLLRLLKTTISS-KSNYHHRLVLDECKVGFGMLIDDFNNGFNNLEKSDVRK 180
>Z67737-7|CAA91543.1| 2692|Caenorhabditis elegans Hypothetical
protein T01H10.8 protein.
Length = 2692
Score = 28.7 bits (61), Expect = 6.5
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +1
Query: 178 EDNSLNTLAESAKKTIEELREKVESALAPETVKKNFGTMVDSFNEFYKNLKPAEAPK 348
E++S L K TI + L + K FG ++D FN + NL+ ++ K
Sbjct: 125 EEDSQILLLRLLKTTISS-KSNYHHRLVLDECKVGFGMLIDDFNNGFNNLEKSDVRK 180
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein
34 protein.
Length = 299
Score = 28.3 bits (60), Expect = 8.6
Identities = 23/75 (30%), Positives = 24/75 (32%), Gaps = 7/75 (9%)
Frame = -2
Query: 947 PGXPPXXGXXXXPPLXXXKXXP----PXXXPGXXXXXG--GGXXEEGAPKXKTPLXPG-X 789
PG P G P L P P PG G G E G P PL PG
Sbjct: 159 PGPPGDSGEPGSPGLPGQDAAPGEPGPKGPPGPPGAPGAPGTPGEPGVPAQSEPLIPGEP 218
Query: 788 GXGXXXAXKXPPXPP 744
G + PP P
Sbjct: 219 GPPGEAGPQGPPGSP 233
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular
collagen RAM-4 protein.
Length = 299
Score = 28.3 bits (60), Expect = 8.6
Identities = 23/75 (30%), Positives = 24/75 (32%), Gaps = 7/75 (9%)
Frame = -2
Query: 947 PGXPPXXGXXXXPPLXXXKXXP----PXXXPGXXXXXG--GGXXEEGAPKXKTPLXPG-X 789
PG P G P L P P PG G G E G P PL PG
Sbjct: 159 PGPPGDSGEPGSPGLPGQDAAPGEPGPKGPPGPPGAPGAPGTPGEPGVPAQSEPLIPGEP 218
Query: 788 GXGXXXAXKXPPXPP 744
G + PP P
Sbjct: 219 GPPGEAGPQGPPGSP 233
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,153,312
Number of Sequences: 27780
Number of extensions: 273741
Number of successful extensions: 923
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2475644248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -